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. Author manuscript; available in PMC: 2024 Oct 29.
Published in final edited form as: Methods Enzymol. 2024 Jun 29;703:299–328. doi: 10.1016/bs.mie.2024.05.021
Method Sample Type Sample Parameters Information Content
Atomic Absorption Spectroscopy Purified dioxygenase, purified reductase Iron content 1–20 μM Total iron content, correlated to protein concentration to estimate upper limit on complete active site content
UV-Visible Rieske Cluster Analysis Purified dioxygenase Protein concentration 3–10 μM Qualitative Rieske cluster content reported as a ratio of Rieske peak absorbance intensity at 450 and 550 nm to protein absorbance at 280 nm
Steady State Activity Purified dioxygenase, purified reductase 2 μM dioxygenase, 6 μM reductase Activity following protein incubation at elevated temperatures relative to specific activity at temperature optimum
Lifetime Purified dioxygenase, purified reductase 2 μM dioxygenase, 6 μM reductase Total number of catalytic cycles each enzyme can undergo prior to loss of activity, typically irreversible; Here we outline real-time monitoring of NADH absorbance and discontinuous substrate quantification by HPLC.
DSC Purified dioxygenase or reductase 20 μM protein Heat capacity variation due to structural transition event as samples exposed to heat. The result of this method is a quantitative ΔH and mapping of the thermal dissociation pathway for the protein.