Table 2.
Genomes used in orthology, synteny, and positive selection analyses
| Species | Assembly | Citation |
|---|---|---|
| Myodes glareolus | CUNY_Mgla_1.0 | This paper |
| Cavia porcellus* | Cavpor3.0 | [106] |
| Cavia aperea* | CavAp1.0 | [107] |
| Marmota marmota | marMar2.1 | [108] |
| Microtus ochrogaster* | MicOch1.0 | [109] |
| Mus musculus | GRCm39 | [110] |
| Oryctolagus cuniculus* | OryCun2.0 | [106] |
| Dipodomys ordii* | Dord_2.0 | [106] |
| Jaculus jaculus | JacJac1.0 | [111] |
| Rattus norvegicus | Rnor_6.0 | [112] |
| Mus pahari | PAHARI_EIJ_v1.1 | [113] |
| Mus caroli | CAROLI_EIJ_v1.1 | [113] |
| Mus spretus | SPRET_EiJ_v1 | [114] |
| Mus spicilegus | MUSP714 | [115] |
| Cricetulus griseus | CHOK1GS | [116] |
| Mesocricetus auratus | MesAur1.0 | [117] |
| Peromyscus maniculatus | HU_Pman_2.1 | [118] |
| Nannospalax galili | S.galili_v1.0 | [119] |
| Octodon degus* | OctDeg1.0 | [120] |
| Heterocephalus glaber (F) | HetGla_female_1.0 | [121] |
| Chinchilla lanigera* | ChiLan1.0 | [122] |
| Urocitellus parryi | ASM342692v1 | [123] |
| Ictidomys tridecemlineatus | SpeTri2.0 | [124] |
| Homo sapiens** | GRCh38 | [125] |
*Species with unrooted molars; **Peptide annotation used as outgroup only in OrthoFinder analysis