Table 1. Information for 23 canditate genes with 28 significant SNPs that were annotated as growth-related.

Trait	SNPa	Geneb	Allelec	Effectd	Gene function
aThe number after '_' represents the SNP position on the corresponding unigene or scaffold; bdepending on the location of the SNP, it is annotated with the corresponding unigene or the gene corresponding to the scaffold; cthe first nucleotide is the reference nucleotide, and the second nucleotide is the nucleotide following the substitution event. dthe annotation of the SNP, i.e. where the mutation occurred.
CWH	scaffold22007_82420	PITA_34108	C > T	missenset	Neurofilament heavy polypeptide-like
	scafold44702_108111	−	−	−	−
CV	scaffold114212_305642	PITA_24813	A > T	missense	Ubiquitin family
	scaffold78970_13765	PITA_16597	G >A	downstream_gene	PAR1 protein
CA	scaffold124904_157642	PITA_04981	A >G	synonymous	Fe2OG dioxygenase domain-containing protein
	scaffold125333_242817	PITA_17436	A > C	downstream_gene	KH domain
	scaffold165935_108445	PITA_23370	T > C	downstream_gene	−
	scaffold200020_15423	PITA_24554	C > G	missense	Ethylene-responsive element binding factor
	scaffold200020_15465	PITA_24554	G >A	missense	Ethylene-responsive element binding factor
	scaffold71840_181523	−	G > A	intergenic	−
	scaffold78970_13765	PITA_16597	G > A	downstream	PAR1 protein
CW	Gene.216560_1274	Gene.216560	G > A	missense	Putative DEAD-like helicase
	Gene.216560_1286	Gene.216560	A > G	missense	Putative DEAD-like helicase
	Gene.22986_174	Gene.22986	T > C	synonymous	Twinkle homolog protein, chloroplastic/mitochondrial isoform X2
	scaffold10289_45294	PITA_04230	A > C	synonymous	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
	scaffold103964_286446	−	C > T	intergenic	−
	scaffold230610_125905	PITA_01330	G > A	downstream	Hsp20/alpha crystallin family
	scaffold41862_112441	PITA_00750	G > T	intron	Zinc finger protein CONSTANS-LIKE 6
	scaffold59196_160287	PITA_40818	T > C	intergenic	Arogenate dehydrogenase 2
CBH	scaffold136313_20762	PITA_21834	G > A	missense	Two-component response regulator ORR22
	scaffold139188_163347	PITA_38848	G > C	upstream	Annexin
	scaffold29915_108204	−	T > C	intergenic	−
	scaffold76835_129711	−	A > G	intergenic	−
	super3003_478531	PITA_04633	G > A	downstream	MFS domain-containing protein
H	scaffold114212_305642	PITA_24813	A > C	missense	Ubiquitin family
	scaffold78970_13765	PITA_16597	G > A	downstream	PAR1 protein
CL	scaffold114212_305642	PITA_24813	A > C	missense	Ubiquitin family
	scaffold78970_13765	PITA_16597	G > A	downstream	PAR1 protein