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. 2024 May 13;4:e019. doi: 10.48130/forres-0024-0016

Figure 2.

Figure 2

Chromosomal features of the DH15 genome. (a) Circus diagram of P. ussuriensis DH15 genome. Genome elements are shown in the following scheme (from outer to inner). (I) Chromosome karyotype analysis; (II) Distribution of tRNA (window size, 500 kb); (III) Gene density (window size, 500 kb). (IV) Distribution of GC content (window size, 500 kb); (V) Distribution of transposable element (TE); (VI) Syntenic relationships among different chromosomes of P. ussuriensis. (b) Hi-C interaction heatmap based on the chromosome-scale assembly. The map represents the contact matrices generated by aligning the Hi-C data to the chromosome-scale assembly. Heatmap shows Hi-C interactions under the resolution of 100 kb. (c) Visualization of telomeres, centromeres, and gaps position on chromosomes of P. ussuriensis.