REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit CK19 | Abcam | Cat# ab52625, RRID: AB_2281020 |
Rabbit Ki67 | Abcam | Cat# ab15580, RRID: AB_443209 |
Goat Col1 | SouthernBiotech | Cat# 1310-01, RRID: AB_2753206 |
Mouse αSMA | DAKO | Cat# M0851, RRID: AB_2223500 |
Rabbit CD4 | Abcam | Cat# ab183685, RRID: AB_2686917 |
Rabbit CD8 | Cell Signaling | Cat# 85336S, RRID: AB_2800052 |
Rabbit Arginase 1 | Abcam | Cat# ab91279, RRID: AB_10674215 |
Rabbit CD45 | Cell Signaling | Cat# 70257, RRID: AB_2799780 |
Rat CK8 | Sigma | Cat# MABT329, RRID: AB_2891089 |
Rabbit Cadherin 1 | Cell Signaling | Cat# 3195, RRID: AB_2291471 |
Rabbit Vimentin | Cell Signaling | Cat# 5741, RRID: AB_10695459 |
Rabbit ZEB1 | Novus Biological | Cat# NBP1-05987, RRID: AB_1556166 |
Rabbit phospho-ERK1/2 | Cell Signaling | Cat# 9101S, RRID: AB_331646 |
Rabbit ERK | Cell Signaling | Cat# 9102, RRID: AB_330744 |
Rabbit Cleaved Caspase-3 | Cell Signaling | Cat# 9664S, RRID: AB_2070042 |
Rabbit p63 | Abcam | Cat# ab124762, RRID: AB_10971840 |
Rabbit β-actin | Cell Signaling | Cat# 4970, RRID: AB_2223172 |
Rabbit CK5 | Cell Signaling | Cat#71536T, RRID: AB_3101753 |
Rabbit HSP90 | Cell Signaling | Cat# 4877T, RRID: AB_2233307 |
Goat CD206 | R&D Systems | Cat# AF2535, RRID: AB_2063012 |
Rabbit CK5 | BioLegend | Cat# 905501, RRID: AB_2565050 |
Mouse CK8 | Abcam | Cat# ab9023, RRID: AB_306948 |
Rat Ly6G | Abcam | Cat# ab25377, RRID: AB_470492 |
Rabbit CD4 | Cell Signaling | Cat# 25229, RRID: AB_2798898 |
Rat FoxP3 | eBioscience | Cat# 4-4771-80, RRID: AB_529583 |
Rat Granzyme B | eBioscience | Cat# 50-8898-82, RRID: AB_11219679 |
Rat LAG3 | Bio X Cell | Cat# BP0174, RRID: AB_10949602 |
Rat PD-1 | Bio X Cell | Cat# BE0273, RRID: AB_2687796 |
Bacterial and virus strains | ||
pCMV5B-Smad4 | Addgene | Cat# 11743 |
Chemicals, peptides, and recombinant proteins | ||
Protease inhibitor | Roche | Cat# 4693116001 |
Crystal violet | Sigma | Cat# C0775 |
Lipofectamine 2000 | Invitrogen | Cat# 11668027 |
RNAiMAX | Invitrogen | Cat# 13778-150 |
MRTX1133 | Selleck | Cat# E1051 |
GSK1120212 | Selleck | Cat# S2673 |
Verteporfin | Selleck | Cat# S1786 |
Gemcitabine | LC Laboratories | Cat# G4199 |
Niclosamide | Selleck | Cat# S3030 |
Olaparib | Selleck | Cat# S1060 |
JQ1 | Selleck | Cat# S7110 |
MK-2206 2HCl | Selleck | Cat# S1078 |
7RH | MedChemExpress | Cat# HY-U00444 |
VS-4718 | Selleck | Cat# S7653 |
Rapamycin | Selleck | Cat# S1039 |
RSL3 | MedChemExpress | Cat# HY100218A |
Erastin | MedChemExpress | Cat# HY15763 |
Collagenase IV | Gibco | Cat# 17104019 |
Dispase II | Gibco | Cat# 17105041 |
Type I collagen solution from rat tail | Sigma-Aldrich | Cat# C3867 |
Critical commercial assays | ||
Direct-zol RNA Kit | Zymo Research | Cat# 11-331 |
Reverse Transcription Kit | Applied Biosystems | Cat# 4368814 |
SYBR Green Master Mix | Applied Biosystems | Cat# 4367659 |
Cell Counting Kit-8 | Abcam | Cat# ab228554 |
Chromium Single Cell 3′ Reagent Kits (v2) | 10x Genomics | Cat# PN-120237 |
ABC-Kit | Vector | Cat# PK-6100 |
Stable DAB | Invitrogen | Cat# 750118 |
Alcian blue Stain Kit | Abcam | Cat# 150662 |
Pierce BCA protein assay kit | Thermo Fisher | Cat# 23208 |
Picrosirius Red | Abcam | Cat# 150681 |
TruSeq Stranded mRNA Sample Prep Kit | Illumina | Cat# 20020594 |
Deposited data | ||
KPPC and PPSSC cancer cell lines RNA-sequencing | This paper | GEO: GSE268896 |
KPPC and PPSSC pancreatic tumors Single-cell RNA-sequencing | This paper | GEO: GSE268899 |
TCGA pancreatic adenocarcinoma cohort survival and gene expression data (GDAC Firehose PAAD) | Broad Institute | http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/PAAD/20160128/ |
Experimental models: Cell lines | ||
Primary mouse KPPC cancer cell line | This paper | N/A |
Primary mouse PPSSC cancer cell line | This paper | N/A |
Experimental models: Organisms/strains | ||
Mouse: LSL-KrasG12D/+;Trp53loxP/+;Pdx1-Cre | Chen et al.32 | N/A |
Mouse: LSL-KrasG12D/+;Trp5R172H/+;Pdx1-Cre | Chen et al.32 | N/A |
Mouse: Smad4loxP/loxP | Jackson Laboratory | 017462 |
Mouse: Tgfbr2loxP/loxP | Jackson Laboratory | 012603 |
Oligonucleotides | ||
See Table S1 | Sigma | N/A |
Recombinant DNA | ||
pCMV5B-Smad4 | Addgene | Cat# 11743 |
Software and algorithms | ||
Prism v10.0.0 | GraphPad Software Inc. | http://www.graphpad.com/ |
cBioportal v2.2.0 | MSK Center for Mol Onc | https://www.cbioportal.org/ |
Seurat R package (3.5.3) | Satija et al.34 | https://satijalab.org/seurat/ |
DESeq2 | Anders and Huber35 | https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
STAR aligner | Dobin et al.36 | https://github.com/alexdobin/STAR |
Gene Set Enrichment Analysis (GSEA) | Broad Institute | http://software.broadinstitute.org/gsea/index.jsp |