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. 2024 Oct 31;19:81. doi: 10.1186/s40793-024-00626-w

Table 1.

The results of the CANT-HYD Hidden Markov Model (HMM) analysis performed on metagenome-assembled genomes (MAGs)

Bin 23
GTDB:g_Halioglobus MiGa (AAI):Halioglobus 60.77%
Bin 344
GTDB:f_JACDCH01
MiGa (AAI):Actinomarinicola 50.83%
Bin 272
GTDB:f_Ilumatobacteraceae
MiGa (AAI):Nocardioides 43.19%
Bin 134
GTDB:g_SZUA35
MiGa (AAI):Micromonospora 43.60%
Bin 301
GTDB:g_SZUA35
MiGa (AAI):Actinomarinicola 49.87%
Bin 363
GTDB:g_CAISIP01
MiGa (AAI):Curvibacter 62.96%
Bin 161
GTDB:o_Pseudomonadales
MiGa (AAI):Spongiibacter 52.79%
Bin 144
GTDB:g_Ga0077527
MiGa (AAI):Thauera 52.07%
Bin 370
GTDB:g_Phenylobacterium
MiGa (AAI):Phenylobacterium 59.95%
Bin 377
GTDB:g_Comamonas
MiGa (AAI):Acidovorax 83.65%
Aerobic alkane degradation
AlkB 2 0 0 0 0 0 2 4 0 0
AlmA_GroupI 11 10 8 6 7 4 3 2 8 2
AlmA_GroupIII 9 9 5 5 7 6 2 1 7 1
CYP153 21 20 8 11 15 5 2 0 11 2
LadA_alpha 10 9 4 9 8 1 2 1 2 4
LadA_beta 6 11 11 10 9 0 3 1 2 5
LadB 20 23 22 23 26 0 4 1 4 4
pBmoB 0 0 0 0 0 0 0 0 0 0
pBmoC 0 0 0 0 0 0 0 0 0 0
PrmA 0 0 0 1 0 0 0 0 0 0
PrmC 0 0 0 1 0 0 0 0 0 0
sBmoX 0 0 0 1 0 0 0 0 0 0
sBmoY 0 0 0 1 0 0 0 0 0 0
Aerobic aromatic degradation
DmpO 0 0 0 0 0 0 0 0 0 0
DszC 25 16 15 15 13 15 9 13 17 11
MAH_alpha 9 3 7 3 2 5 5 1 1 4
MAH_beta 0 0 0 0 0 2 1 0 0 1
NdoB 9 3 7 4 3 8 6 1 2 8
NdoC 0 0 0 0 0 2 1 0 0 1
non_NdoB_type 11 5 9 6 4 13 9 1 3 9
TmoA_BmoA 1 0 0 2 0 0 0 1 0 0
TmoB_BmoB 0 0 0 0 0 0 0 0 0 0
TmoE 0 0 0 1 0 0 0 0 0 0
TomA1 0 0 0 1 0 0 0 0 0 0
TomA3 1 0 1 2 0 0 0 2 0 0
TomA4 0 0 0 0 0 0 0 0 0 0
Anaerobic alkane degradation
AhyA 10 6 8 6 8 7 7 7 2 5
AssA 0 0 0 0 0 0 0 0 0 0
Anaerobic aromatic degradation
AbcA_1 1 0 0 0 0 0 1 5 1 0
AbcA_2 1 0 0 0 0 1 1 6 1 0
CmdA 9 5 7 5 6 6 6 6 1 4
EbdA 9 6 8 6 8 6 6 8 2 4
K27540 1 0 0 0 0 0 1 5 1 0

Among the analyzed MAGs, the top 10 MAGs with the most abundant key hydrocarbon degradation genes were identified and listed