Table 2.
Merged entity types.
| Dataset and medical entity type | Merged entity type | ||
| Revised JNLPBAa | |||
|
|
DNA, RNA, and protein | Macromolecule | |
|
|
Cell line and cell type | Cell | |
| BC5CDRb | |||
|
|
Disease | Disease | |
|
|
Chemical | Chemical | |
| AnatEMc | |||
|
|
Organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, and cellular component | Anatomical structure | |
|
|
Organism substance | Organism substance | |
|
|
Immaterial anatomical entity | Immaterial anatomical entity | |
|
|
Pathological formation and cancer | Pathological formation | |
aJNLPBA: Joint Workshop on Natural Language Processing in Biomedicine and its Applications.
bBC5CDR: BioCreative V CDR.
cAnatEM: Anatomical Entity Mention.