Table 1.
Basic information on the evaluated tools
| Package | Language | URL |
|---|---|---|
| deconstructSigs | R | https://github.com/raerose01/deconstructSigs |
| mmsig | R | https://github.com/evenrus/mmsig |
| MuSiCal | Python | https://github.com/parklab/MuSiCal |
| MutationalPatterns | R | https://bioconductor.org/packages/release/bioc/html/MutationalPatterns.html |
| sigfit | R | https://github.com/kgori/sigfit |
| sigLASSO | R | https://github.com/gersteinlab/siglasso |
| sigminer | R | https://shixiangwang.github.io/sigminer |
| signature.tools.lib | R | https://github.com/Nik-Zainal-Group/signature.tools.lib |
| SigProfilerAssignment | Python | https://github.com/AlexandrovLab/SigProfilerAssignment |
| SigProfilerSingleSample | Python | https://github.com/AlexandrovLab/SigProfilerSingleSample |
| SigsPack | R | https://bioconductor.org/packages/release/bioc/html/SigsPack.html |
| YAPSA | R | https://bioconductor.org/packages/release/bioc/html/YAPSA.html |