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. 2024 Nov 1;9:53. doi: 10.1038/s41525-024-00438-4

Table 3.

List of genes related to the top 20 differentially methylated regions (DMRs) in the analysis of the DNA methylation profile of patients post-trauma vs. 30d-trauma (analysis 2)

Gene ID(s) Gene name(s) hg19 genomic coordinates No. of CpGs Percent mean methylation difference q-value
DUS2 Dihydrouridine Synthase 2 chr16: 68112968-68113598 2 2.2 1.14 × 10−7
VKORC1 Vitamin K Epoxide Reductase Complex Subunit 1 chr16:31105982-31107784 16 0.8 1.25 × 10−6
JAK1 Janus Kinase 1 chr1:65348569-65348727 2 3.9 1.48 × 10−6
MVD Mevalonate Diphosphate Decarboxylase chr16:88720046-88721033 4 2.3 1.59 × 10−6
BLM BLM RecQ Like Helicase chr15:91292460-91293212 5 -2.5 1.79 × 10−6
MTSS1 MTSS I-BAR Domain Containing 1 chr8:125698322-125698676 2 2.0 2.04 × 10−6

LPP

LPP-AS1

LIM Domain Containing Preferred Translocation Partner In Lipoma

LPP Antisense RNA 1

chr3:188285801-188287006 9 4.6 2.08 × 10−6

ITPR1

EGOT

Inositol 1,4,5-Trisphosphate Receptor Type 1

Eosinophil Granule Ontogeny Transcript

chr3:4790361-4791251 4 2.4 2.97 × 10−6

KCTD7

RABGEF1

Potassium Channel Tetramerization Domain Containing 7

RAB Guanine Nucleotide Exchange Factor 1

chr7:66255551-66256111 4 1.5 5.61 × 10−6
RAB11FIP1 RAB11 Family Interacting Protein 1 chr8:37731969-37732224 3 1.8 6.06 × 10−6
APMAP Adipocyte Plasma Membrane Associated Protein chr20:24968599-24968849 2 3.0 6.90 × 10−6
KMT2C Lysine Methyltransferase 2C chr7:151840170-151841181 3 -1.3 7.14 × 10−6
CCDC88C Coiled-Coil Domain Containing 88C chr14:91864095-91864737 2 0.3 8.34 × 10−6
SIK3 SIK Family Kinase 3 chr11:116942829-116943299 2 -2.0 8.34 × 10−6
USP36 Ubiquitin Specific Peptidase 36 chr17: 76789167-76789804 2 1.4 9.06 × 10−6
DGKD Diacylglycerol Kinase Delta chr2:234288623-234289457 6 1.2 9.22 × 10−6
AXIN1 Axin1 chr16:392436-392723 2 2.4 9.89 × 10−6
CALHM1 Calcium Homoeostasis Modulator 1 chr10:105217980-105219759 11 3.7 1.11 × 10−5
LINC00426 Long Intergenic Non-Protein Coding RNA 426 chr13:30947309-30948716 6 1.2 1.29 × 10−5
NMUR1 Neuromedin U Recepter 1 chr2:232393064-232393816 4 2.5 1.33 × 10−5