Table 3.
List of genes related to the top 20 differentially methylated regions (DMRs) in the analysis of the DNA methylation profile of patients post-trauma vs. 30d-trauma (analysis 2)
| Gene ID(s) | Gene name(s) | hg19 genomic coordinates | No. of CpGs | Percent mean methylation difference | q-value |
|---|---|---|---|---|---|
| DUS2 | Dihydrouridine Synthase 2 | chr16: 68112968-68113598 | 2 | 2.2 | 1.14 × 10−7 |
| VKORC1 | Vitamin K Epoxide Reductase Complex Subunit 1 | chr16:31105982-31107784 | 16 | 0.8 | 1.25 × 10−6 |
| JAK1 | Janus Kinase 1 | chr1:65348569-65348727 | 2 | 3.9 | 1.48 × 10−6 |
| MVD | Mevalonate Diphosphate Decarboxylase | chr16:88720046-88721033 | 4 | 2.3 | 1.59 × 10−6 |
| BLM | BLM RecQ Like Helicase | chr15:91292460-91293212 | 5 | -2.5 | 1.79 × 10−6 |
| MTSS1 | MTSS I-BAR Domain Containing 1 | chr8:125698322-125698676 | 2 | 2.0 | 2.04 × 10−6 |
|
LPP LPP-AS1 |
LIM Domain Containing Preferred Translocation Partner In Lipoma LPP Antisense RNA 1 |
chr3:188285801-188287006 | 9 | 4.6 | 2.08 × 10−6 |
|
ITPR1 EGOT |
Inositol 1,4,5-Trisphosphate Receptor Type 1 Eosinophil Granule Ontogeny Transcript |
chr3:4790361-4791251 | 4 | 2.4 | 2.97 × 10−6 |
|
KCTD7 RABGEF1 |
Potassium Channel Tetramerization Domain Containing 7 RAB Guanine Nucleotide Exchange Factor 1 |
chr7:66255551-66256111 | 4 | 1.5 | 5.61 × 10−6 |
| RAB11FIP1 | RAB11 Family Interacting Protein 1 | chr8:37731969-37732224 | 3 | 1.8 | 6.06 × 10−6 |
| APMAP | Adipocyte Plasma Membrane Associated Protein | chr20:24968599-24968849 | 2 | 3.0 | 6.90 × 10−6 |
| KMT2C | Lysine Methyltransferase 2C | chr7:151840170-151841181 | 3 | -1.3 | 7.14 × 10−6 |
| CCDC88C | Coiled-Coil Domain Containing 88C | chr14:91864095-91864737 | 2 | 0.3 | 8.34 × 10−6 |
| SIK3 | SIK Family Kinase 3 | chr11:116942829-116943299 | 2 | -2.0 | 8.34 × 10−6 |
| USP36 | Ubiquitin Specific Peptidase 36 | chr17: 76789167-76789804 | 2 | 1.4 | 9.06 × 10−6 |
| DGKD | Diacylglycerol Kinase Delta | chr2:234288623-234289457 | 6 | 1.2 | 9.22 × 10−6 |
| AXIN1 | Axin1 | chr16:392436-392723 | 2 | 2.4 | 9.89 × 10−6 |
| CALHM1 | Calcium Homoeostasis Modulator 1 | chr10:105217980-105219759 | 11 | 3.7 | 1.11 × 10−5 |
| LINC00426 | Long Intergenic Non-Protein Coding RNA 426 | chr13:30947309-30948716 | 6 | 1.2 | 1.29 × 10−5 |
| NMUR1 | Neuromedin U Recepter 1 | chr2:232393064-232393816 | 4 | 2.5 | 1.33 × 10−5 |