Table 1.
Characterization and validation.
| Classification | Test | Result | Data |
|---|---|---|---|
|
| |||
| Morphology | Photography | Visual record of the line: normal | Fig. 1 panel A |
| Phenotype | Quantitative analysis: RT-qPCR | Positive expression of pluripotency markers NANOG and SOX2 in the two FH iPSC lines and absent in differentiated CMs |
Fig. 1 panel B |
| Qualitative analysis: Immunofluorescence staining |
Positive expression of pluripotency markers: OCT3/4, NANOG, and SOX2 in the two FH iPSC lines |
Fig. 1 panel C | |
| Genotype | Whole genome array (KaryoStat™ Assay) Resolution 1–2 Mb |
Normal karyotype: 46, XY for line SCVIi108-A and 46, XX for line SCVIi109-A | Fig. 1 panel F |
| Identity | Microsatellite PCR (mPCR) or | N/A | N/A |
| STR analysis | 16 loci tested match well | submitted in archive with journal | |
| Mutation analysis (IF APPLICABLE) | Sequencing Southern blot or WGS |
Heterozygous mutation N/A |
Fig. 1 panel E
N/A |
| Microbiology and virology | Mycoplasma | Mycoplasma testing by luminescence: Negative |
Fig. 1 panel H |
| Differentiation potential | Directed differentiation | Positive IF staining of three germ layer markers | Fig. 1 panel D |
|
List of
recommended germ layer markers |
Expression of these markers has to be demonstrated at mRNA (RT qPCR) or protein (IF) levels, at least 2 markers need to be shown per germ layer | Ectoderm: PAX6, OTX2 Endoderm: SOX17, FOXA2 Mesoderm: Brachyury, TBX6 |
Fig. 1 panel D |
| Donor screening (OPTIONAL) | HIV 1 + 2 Hepatitis B, Hepatitis C | N/A | N/A |
|
Genotype additional info
(OPTIONAL) |
Blood group genotyping | N/A | N/A |
| HLA tissue typing | N/A | N/A | |