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. Author manuscript; available in PMC: 2024 Nov 4.
Published in final edited form as: Stem Cell Res. 2024 Jun 4;78:103463. doi: 10.1016/j.scr.2024.103463

Table 1.

Characterization and validation.

Classification Test Result Data

Morphology Photography Visual record of the line: normal Fig. 1 panel A
Phenotype Quantitative analysis: RT-qPCR Positive expression of pluripotency markers NANOG and SOX2 in the two FH iPSC lines and absent in
differentiated CMs
Fig. 1 panel B
Qualitative analysis: Immunofluorescence
staining
Positive expression of pluripotency markers: OCT3/4, NANOG, and
SOX2 in the two FH iPSC lines
Fig. 1 panel C
Genotype Whole genome array
(KaryoStat Assay) Resolution 1–2 Mb
Normal karyotype: 46, XY for line SCVIi108-A and 46, XX for line SCVIi109-A Fig. 1 panel F
Identity Microsatellite PCR (mPCR) or N/A N/A
STR analysis 16 loci tested match well submitted in archive with journal
Mutation analysis (IF APPLICABLE) Sequencing
Southern blot or WGS
Heterozygous mutation
N/A
Fig. 1 panel E
N/A
Microbiology and virology Mycoplasma Mycoplasma testing by luminescence:
Negative
Fig. 1 panel H
Differentiation potential Directed differentiation Positive IF staining of three germ layer markers Fig. 1 panel D
List of
recommended germ layer markers
Expression of these markers has to be demonstrated at mRNA (RT qPCR) or protein (IF) levels, at least 2 markers need to be shown per germ layer Ectoderm: PAX6,
OTX2
Endoderm: SOX17, FOXA2 Mesoderm:
Brachyury, TBX6
Fig. 1 panel D
Donor screening (OPTIONAL) HIV 1 + 2 Hepatitis B, Hepatitis C N/A N/A
Genotype additional info
(OPTIONAL)
Blood group genotyping N/A N/A
HLA tissue typing N/A N/A