Table 3.
Mutations of CS40 strain genome from whole genome shotgun sequencing data
| No | Loci | Mutation Type | WT | CS40 | Effects | Locus tag |
|---|---|---|---|---|---|---|
| 1 | aChromosome (261,875) | Point mutation | A | C | – | Intergenic region |
| 2 | Chromosome (1,110,051) | Insertion | – | G | – | Intergenic region |
| 3 | Chromosome (1,248,778) | Insertion | – | G | – | Intergenic region |
| 4 | Chromosome (1,909,843) | Insertion | – | 84,369 bp | Duplication | – |
| 5 | Chromosome (2,610,413–2,610,629) | Deletion | 217 bp | – | – | Intergenic region |
| 6 | Chromosome (2,805,889) | Point mutation | G | A | Missense (Ala175Val) | AYM39_12470 |
| 7 | Chromosome (4,271,282) | Deletion | C | – | Frame shift | AYM39_19030 |
| 8 | Chromosome (4,458,259) | Point mutation | C | A | – | Intergenic region |
| 9 | Chromosme (Integrated malate synthase) | Insertion | – | 132 bp | Fragmentation by stop codon | – |
| 10 | bPlasmid (16,199–19,918) | Deletion | 3720 bp | – | In frame deletion | AYM39_21655 |
| 11 | Plasmid (21,446–21,725) | Substitution | 280 bp | 280 bp | Missense | AYM39_21655 |