Table 1. Results of quantum refinement with different weight factors for the Mn site in the B subunit of MnSOD.
The table shows seven key distances (N1—N3 are the coordinating N atoms of His26B, His74B and His163B), as well as Δdav (the average difference in the seven distances between the quantum-refined structure and the structure used to calculate ΔEQM1), RSZD averaged over the nine residues in the QM region and the strain energy (ΔEQM1). The individual RSZD values are given in Table S1.
| Distance to Mn (Å) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| w x | w c | w QM | N1 | N2 | OAsp | N3 | OW | HW—NGln (Å) | OW—HW (Å) | Δdav (Å) | RSZDav | ΔEQM1 (kJ mol−1) |
| 0 | 1 | 7.5 | 2.27 | 2.24 | 2.02 | 2.28 | 1.99 | 1.12 | 1.49 | 0.000 | 1.2 | 0 |
| 0.01 | 1 | 7.5 | 2.27 | 2.26 | 2.02 | 2.27 | 1.98 | 1.09 | 1.53 | 0.002 | 1.2 | 1 |
| 0.03 | 1 | 7.5 | 2.27 | 2.26 | 2.02 | 2.27 | 1.98 | 1.09 | 1.53 | 0.013 | 1.2 | 4 |
| 0.1 | 1 | 7.5 | 2.27 | 2.27 | 2.02 | 2.27 | 1.98 | 1.09 | 1.53 | 0.014 | 1.2 | 4 |
| 0.3 | 1 | 7.5 | 2.27 | 2.25 | 2.03 | 2.28 | 1.98 | 1.10 | 1.50 | 0.003 | 1.2 | 1 |
| 1 | 1 | 7.5 | 2.27 | 2.26 | 2.02 | 2.28 | 1.99 | 1.11 | 1.51 | 0.005 | 1.1 | 2 |
| 3 | 1 | 7.5 | 2.31 | 2.29 | 2.05 | 2.27 | 2.01 | 1.09 | 1.63 | 0.025 | 0.8 | 22 |
| 10 | 1 | 7.5 | 2.33 | 2.36 | 2.09 | 2.25 | 2.04 | 1.09 | 1.77 | 0.067 | 0.8 | 117 |
| 30 | 1 | 7.5 | 2.33 | 2.54 | 2.08 | 2.21 | 2.04 | 1.10 | 2.08 | 0.152 | 0.8 | 442 |
| 100 | 1 | 7.5 | 2.23 | 2.99 | 1.95 | 2.05 | 2.85 | 1.59 | 1.17 | 0.406 | 0.7 | 1615 |
| 1 | 0 | 0 | 4.21 | 6.04 | 3.30 | 2.33 | 3.53 | 1.50 | 2.07 | 1.341 | 0.3 | 1079359 |
| Deposited | 2.10 | 2.25 | 2.16 | 2.21 | 2.25 | 1.59 | 0.97 | 0.233 | 1.3 | 362 | ||