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. 2024 Sep 30;11(Pt 6):921–937. doi: 10.1107/S2052252524008406

Table 4. Quality measures and Fe—O distances (Å) for the four quantum-refined structures with varying protonation states of homocitrate (HCA, cf. Fig. 4) and different weight factors.

The quality measures are RSZD, RSR and RSCC for homocitrate, the strain energy (ΔEQM1) and the average difference in the Fe—O bond lengths to the homocitrate O5 (carboxyl­ate) and O7 (alcohol) atoms in the quantum-refined structure (Δdav), (Fe—O)QR, and in a structure optimized by QM/MM, i.e. with wx = 0, (Fe—O)QM. The best results are marked in bold.

                  (Fe—O)QR (Fe—O)QM
w x w c q w HCA RSZD RSR RSCC ΔEQM1 Δdav O5 O7 O5 O7
Auto 1   0H 0.6 0.042 0.969 126 0.13 2.25 2.17 2.18 1.99
∼9     1Hc 0.6 0.043 0.968 168 0.09 2.26 2.18 2.22 2.05
      1Ha 0.6 0.042 0.971 133 0.10 2.23 2.19 2.13 2.29
      2H 0.7 0.043 0.970 120 0.07 2.24 2.19 2.22 2.31
9 1 9 0H 0.8 0.043 0.967 172 0.13 2.26 2.16 2.18 1.99
      1Hc 0.8 0.043 0.969 214 0.07 2.26 2.18 2.23 2.08
      1Ha 0.6 0.042 0.971 159 0.11 2.23 2.18 2.12 2.29
      2H 0.6 0.043 0.970 156 0.07 2.25 2.18 2.22 2.30
1 1 1 0H 2.8 0.055 0.944 38 0.05 2.22 2.06 2.19 1.99
      1Hc 1.7 0.050 0.955 54 0.04 2.23 2.13 2.22 2.06
      1Ha 0.5 0.044 0.967 41 0.03 2.17 2.20 2.13 2.23
      2H 1.1 0.046 0.962 35 0.04 2.22 2.21 2.23 2.28
9 10 0.9 0H 2.6 0.055 0.944 28 0.03 2.21 2.04 2.20 1.99
      1Hc 2.3 0.052 0.951 41 0.04 2.23 2.12 2.23 2.04
      1Ha 0.5 0.044 0.966 33 0.02 2.16 2.20 2.17 2.24
      2H 1.0 0.046 0.964 35 0.05 2.21 2.21 2.22 2.29
1 10 0.1 0H 5.0 0.054 0.945 0 0.00 2.16 1.99 2.16 1.99
      1Hc 4.4 0.063 0.925 7 0.01 2.22 2.07 2.23 2.05
      1Ha 1.5 0.049 0.958 3 0.00 2.13 2.25 2.13 2.25
      2H 2.6 0.051 0.950 1 0.01 2.21 2.28 2.21 2.29