Table 4. Quality measures and Fe—O distances (Å) for the four quantum-refined structures with varying protonation states of homocitrate (HCA, cf. Fig. 4 ▸) and different weight factors.
The quality measures are RSZD, RSR and RSCC for homocitrate, the strain energy (ΔEQM1) and the average difference in the Fe—O bond lengths to the homocitrate O5 (carboxylate) and O7 (alcohol) atoms in the quantum-refined structure (Δdav), (Fe—O)QR, and in a structure optimized by QM/MM, i.e. with wx = 0, (Fe—O)QM. The best results are marked in bold.
| (Fe—O)QR | (Fe—O)QM | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| w x | w c | q w | HCA | RSZD | RSR | RSCC | ΔEQM1 | Δdav | O5 | O7 | O5 | O7 |
| Auto | 1 | 0H | 0.6 | 0.042 | 0.969 | 126 | 0.13 | 2.25 | 2.17 | 2.18 | 1.99 | |
| ∼9 | 1Hc | 0.6 | 0.043 | 0.968 | 168 | 0.09 | 2.26 | 2.18 | 2.22 | 2.05 | ||
| 1Ha | 0.6 | 0.042 | 0.971 | 133 | 0.10 | 2.23 | 2.19 | 2.13 | 2.29 | |||
| 2H | 0.7 | 0.043 | 0.970 | 120 | 0.07 | 2.24 | 2.19 | 2.22 | 2.31 | |||
| 9 | 1 | 9 | 0H | 0.8 | 0.043 | 0.967 | 172 | 0.13 | 2.26 | 2.16 | 2.18 | 1.99 |
| 1Hc | 0.8 | 0.043 | 0.969 | 214 | 0.07 | 2.26 | 2.18 | 2.23 | 2.08 | |||
| 1Ha | 0.6 | 0.042 | 0.971 | 159 | 0.11 | 2.23 | 2.18 | 2.12 | 2.29 | |||
| 2H | 0.6 | 0.043 | 0.970 | 156 | 0.07 | 2.25 | 2.18 | 2.22 | 2.30 | |||
| 1 | 1 | 1 | 0H | 2.8 | 0.055 | 0.944 | 38 | 0.05 | 2.22 | 2.06 | 2.19 | 1.99 |
| 1Hc | 1.7 | 0.050 | 0.955 | 54 | 0.04 | 2.23 | 2.13 | 2.22 | 2.06 | |||
| 1Ha | 0.5 | 0.044 | 0.967 | 41 | 0.03 | 2.17 | 2.20 | 2.13 | 2.23 | |||
| 2H | 1.1 | 0.046 | 0.962 | 35 | 0.04 | 2.22 | 2.21 | 2.23 | 2.28 | |||
| 9 | 10 | 0.9 | 0H | 2.6 | 0.055 | 0.944 | 28 | 0.03 | 2.21 | 2.04 | 2.20 | 1.99 |
| 1Hc | 2.3 | 0.052 | 0.951 | 41 | 0.04 | 2.23 | 2.12 | 2.23 | 2.04 | |||
| 1Ha | 0.5 | 0.044 | 0.966 | 33 | 0.02 | 2.16 | 2.20 | 2.17 | 2.24 | |||
| 2H | 1.0 | 0.046 | 0.964 | 35 | 0.05 | 2.21 | 2.21 | 2.22 | 2.29 | |||
| 1 | 10 | 0.1 | 0H | 5.0 | 0.054 | 0.945 | 0 | 0.00 | 2.16 | 1.99 | 2.16 | 1.99 |
| 1Hc | 4.4 | 0.063 | 0.925 | 7 | 0.01 | 2.22 | 2.07 | 2.23 | 2.05 | |||
| 1Ha | 1.5 | 0.049 | 0.958 | 3 | 0.00 | 2.13 | 2.25 | 2.13 | 2.25 | |||
| 2H | 2.6 | 0.051 | 0.950 | 1 | 0.01 | 2.21 | 2.28 | 2.21 | 2.29 | |||