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. 2024 Nov 4;15:9507. doi: 10.1038/s41467-024-53620-8

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Population structure revealed by PCA analysis of SG10K-SV-r1.4 genotype values. Each point corresponds to an individual, coloured according to its ethnicity, x and y axis represents the first two principal component respectively. b Proportion of SVs found in all, two or one populations. c Scatter plot of SV’s fixation index (Fst) as a function of their call rate. d Allele frequencies in Chinese, Indian and Malay for selected SVs with elevated fixation index (Fst).