TABLE 2.
Oligonucleotides used for the detection of resistance genes by PCR analysis
| Gene | Primer name | Sequence (5′→3′) | Primer design reference or source |
|---|---|---|---|
| catpIP501 | catF | CCTGCGTGGGCTACTTTA | This study |
| catR | CAAAACCACAAGCAACCA | ||
| erm(B) | erm(B)-F | GAAAAGGTACTCAACCAAATA | 13 |
| erm(B)-R | GTAAACAATTTAAGTACCATTACT | ||
| erm(C) | erm(C)-F | AATCGGCTCAGGAAAAGG | This study |
| erm(C)-R | ATCGTCAATTCCTGCATG | ||
| mecA | mecA-1 | AAAATCGATGGTAAAGGTTGGC | 34 |
| mecA-2 | AGTTCTGCAGTACCGGATTTGC | ||
| tet(K) | tet(K)-1 | TTAGGTGAAGGGTTAGGTCC | This study |
| tet(K)-2 | GCAAACTCATTCCAGAAGCA | ||
| tetA(P) | tetA(P)F | CACAGATTGTATGGGGATTAGG | 36 |
| tetA(P)R | CATTTATAGAAAGCACAGTAGC | ||
| tet(L) | tetLF | GTGAATACATCCTATTCA | This study |
| tetLR | TTAGAAATCCCTTTGAGA | This study | |
| tet(U) | tetU-F | ATGCAGCTAAGACGTGGC | This study |
| tetU-R | TTATTCGGTATCACTTCTCTGTC | ||
| sat4 | sat4-F | CGATAAACCCAGCGAACC | This study |
| sat4-R | ATAACATAGTATCGACGG | ||
| aph(3′)-IIIa | aph3-III-F | CCGCTGCGTAAAAGATAC | This study |
| aph3-III-R | GTCATACCACTTGTCCGC | ||
| ant(6)-Ia | ant6-I-F | AATTGTGACCCTTGAGGG | This study |
| ant6-I-R | GGCATATGTGCTATCCAG | ||
| aac(6′)-Ie-aph(2′)-Ia | aac6-aph2-F | CAGAGCCTTGGGAAGATGAAG | 54 |
| aac6-aph2-R | CCTCGTGTAATTCATGTTCTGGC | ||
| aac(6′)-Ii | aac(6)-Ii-F | GAGATACTGATTGGTAGC | This study |
| aac(6)-Ii-R | TCTTCACTGACTTCTGCC | ||
| dfr(A) | dfrA-F | CCTTGGCACTTACCAAATG | This study |
| dfrA-R | CTGAAGATTCGACTTCCC | ||
| blaZ | blaZ-F | CAGTTCACATGCCAAAGAG | This study |
| blaZ-R | TACACTCTTGGCGGTTTC | ||
| mph(C) | mphC-F | CATTGAATGAATCGGGAC | This study |
| mphC-R | TTCATACGCCGATTCTCC | ||
| van(E) | vanE-F | AGAATGGTGCTATGCAGG | This study |
| vanE-R | TCATGATTTTCCACCGCC | ||
| msr(A) | msrA-F | GCTTAACATGGATGTGG | This study |
| msr(SA) | msrA-R | GATTGTCCTGTTAATTCCC | |
| msr(SA′) | |||
| catD | catDPS-F | CCTTGYACATACAGYATGAC | This study |
| catP | catDPS-R | AACTTGRATKGCSARAGGAAG | |
| catS | |||
| vgb(B) | vgb(B)-F | GTCTATTCCCGATTCAGG | This study |
| vgb(B)-R | TGCAAACCATACGGATCC |