Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

[Preprint]. 2024 Oct 25:rs.3.rs-5315913. [Version 1] doi: 10.21203/rs.3.rs-5315913/v1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

This work is licensed under a Creative Commons Attribution 4.0 International License, which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.

PMC Copyright notice

Figure 5. — Comparisons of spatial clustering performance of default clustering method (Leiden) on 51 real spatial transcriptomics datasets, in four representative platforms including merFISH, cosMx, Xenium, and Visium at default HV genes threshold level (low) and default SV genes threshold level (low). (a, b) boxplots of SC (Spatial Concordance) and Mean Spatial AMI, divided by platform. (b, d) heatmaps of SC and Mean Spatial AMI, ordered by platform. Note: ****: p-value<1e-3; ***: 1e-3 ≤ p-value < 1e-2; **: 1e-2 ≤ p-value < 5e-2; *: 5e-2 ≤ p-value < 0.1; ns: 0.1 ≤ p-value ≤ 1.