TABLE 2.
Oligonucleotide primers for LAMP
Primer | Type | Sequencea | Amplicon size (bp) | Target | Source (Strain) |
---|---|---|---|---|---|
Porphyromonas gingivalis | |||||
Pg-F3 | F3 | 5′-GGC AGT AAT CGG CGC ATT-3′ | 225 | pepO | 381 |
Pg-B3 | B3 | 5′-TCG TGC AGG ATG TCG AAT G-3′ | |||
Pg-FIP | FIP | 5′-ACT GAG GTC GAT GGC CGG TAG CTG CAA TGG CAA TAA GGG T-3′ | |||
Pg-BIP | BIP | 5′-CCG CAG GAC GAC TTT TAT CGC TAG CCG TAG CGA CTA TAA GCA-3′ | |||
Pg-LF | LF | 5′-GCT TCC TGT CAG TAT CGT TAG TCT G-3′ | |||
Pg-LB | LB | 5′-ACT GCA ACG GCA ATT GGA TG-3′ | |||
Tannerella forsythia | |||||
Tf-F3 | F3 | 5′-GCA ACC AAG ATT GCC AGA GA-3′ | 219 | cct | ATCC 43037 |
Tf-B3 | B3 | 5′-AAC AGC GAC TGC AAC GAA-3′ | |||
Tf-FIP | FIP | 5′-GGC ACC ACA CAG GAA CGA GTT AGG GAA TTG CCA AGG ATG TCA-3′ | |||
Tf-BIP | BIP | 5′-GGG TAA GCC AAC GGT AGA GAC CGG AAT CTG CAT TCA CAC-3′ | |||
Tf-LF | LF | 5′-ACG TAGTTG CCG GTG TCA-3′ | |||
Tf-LB | LB | 5′-TCA GTT CCG CCA AGT CAA TG-3′ | |||
Treponema denticola | |||||
Td-F3 | F3 | 5′-AAA GGC TTT GGG CGA CAG-3′ | 240 | opdB | ATCC 35405 |
Td-B3 | B3 | 5′-TCC CGT CCT CAT ACC ACT TT-3′ | |||
Td-FIP | FIP | 5′-GGT GAG GAC CCG TCC TTT ACC ACG GAG TGA AGG TGC CTA TG-3′ | |||
Td-BIP | BIP | 5′-GCT CCG ATG CGT TTT TCA GTC CGC CCC TGA TTT GAG CAA CA-3′ | |||
Td-LF | LF | 5′-AAC CTT TTT TGT AAA CGG CAG C-3′ | |||
Td-LB | LB | 5′-GAG TGT TTA CAG CCT TGT AGA GAG G-3′ |