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. 2005 May;43(5):2418–2424. doi: 10.1128/JCM.43.5.2418-2424.2005

TABLE 2.

Oligonucleotide primers for LAMP

Primer Type Sequencea Amplicon size (bp) Target Source (Strain)
Porphyromonas gingivalis
    Pg-F3 F3 5′-GGC AGT AAT CGG CGC ATT-3′ 225 pepO 381
    Pg-B3 B3 5′-TCG TGC AGG ATG TCG AAT G-3′
    Pg-FIP FIP 5′-ACT GAG GTC GAT GGC CGG TAG CTG CAA TGG CAA TAA GGG T-3′
    Pg-BIP BIP 5′-CCG CAG GAC GAC TTT TAT CGC TAG CCG TAG CGA CTA TAA GCA-3′
    Pg-LF LF 5′-GCT TCC TGT CAG TAT CGT TAG TCT G-3′
    Pg-LB LB 5′-ACT GCA ACG GCA ATT GGA TG-3′
Tannerella forsythia
    Tf-F3 F3 5′-GCA ACC AAG ATT GCC AGA GA-3′ 219 cct ATCC 43037
    Tf-B3 B3 5′-AAC AGC GAC TGC AAC GAA-3′
    Tf-FIP FIP 5′-GGC ACC ACA CAG GAA CGA GTT AGG GAA TTG CCA AGG ATG TCA-3′
    Tf-BIP BIP 5′-GGG TAA GCC AAC GGT AGA GAC CGG AAT CTG CAT TCA CAC-3′
    Tf-LF LF 5′-ACG TAGTTG CCG GTG TCA-3′
    Tf-LB LB 5′-TCA GTT CCG CCA AGT CAA TG-3′
Treponema denticola
    Td-F3 F3 5′-AAA GGC TTT GGG CGA CAG-3′ 240 opdB ATCC 35405
    Td-B3 B3 5′-TCC CGT CCT CAT ACC ACT TT-3′
    Td-FIP FIP 5′-GGT GAG GAC CCG TCC TTT ACC ACG GAG TGA AGG TGC CTA TG-3′
    Td-BIP BIP 5′-GCT CCG ATG CGT TTT TCA GTC CGC CCC TGA TTT GAG CAA CA-3′
    Td-LF LF 5′-AAC CTT TTT TGT AAA CGG CAG C-3′
    Td-LB LB 5′-GAG TGT TTA CAG CCT TGT AGA GAG G-3′
a

Accession numbers: AB010440 for Porphyromonas gingivalis pepO gene; AY368075 for Tannerella forsythia cct gene; and AF355459 for Treponema denticola opdB gene.