TABLE 4.
Sample | Genotypeb | Expected HCV RNA log IU/mlc | TM-ASR HCV RNA log IU/ml | Observed/ expected (%) |
---|---|---|---|---|
1 | 1a | 5.78 | 6.18 | 107 |
2 | 1a | 5.55 | 6.28 | 113 |
3 | 1a | 5.75 | 6.68 | 116 |
4 | 1a | 5.68 | 6.73 | 119 |
5 | 1a | 5.43 | 5.65 | 104 |
6 | 1b | 5.45 | 6.02 | 110 |
7 | 1b | 4.97 | 5.25 | 106 |
8 | 1b | 6.83 | 7.35 | 108 |
9 | 1b | 4.59 | 4.11 | 89.4 |
10 | 1b | 6.67 | 7.05 | 106 |
11 | 2b | 5.64 | 5.73 | 102 |
12 | 2b | 5.43 | 5.39 | 99.4 |
13 | 2b | 5.74 | 6.06 | 105 |
14 | 2b | 6.79 | 6.79 | 100 |
15 | 2b | 6.54 | 6.99 | 107 |
16 | 3a | 3.63 | 3.82 | 105 |
17 | 3a | 3.29 | 3.06 | 92.9 |
18 | 3a | 5.45 | 6.24 | 114 |
19 | 1a | 5.57 | 6.63 | 119 |
20 | 4 | 5.80 | 6.92 | 119 |
21 | 4c/d | 5.04 | 5.48 | 109 |
22 | 3a | 5.80 | 6.66 | 115 |
23 | 4h | 5.34 | 5.96 | 112 |
24 | 5a | 6.66 | 6.92 | 104 |
25 | 5a | 6.26 | 6.54 | 104 |
Genotype inclusively for the lot-specific HCV TM-ASR reagents using the Qiagen BioRobot 9604 was determined using clinical samples from eight different HCV genotypes purchased from Millennium Biotech (Ft. Lauderdale, FL). Genotype-specific samples were extracted using the QIAamp 96 virus/Qiagen BioRobot 9604 and amplified and detected using COBAS TaqMan ASR reagents on the COBAS TaqMan analyzer.
HCV genotypes were determined by Millennium Biotech.
Expected HCV RNA titers for each sample were obtained from Millennium Biotech.