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. 2005 May;43(5):2133–2140. doi: 10.1128/JCM.43.5.2133-2140.2005

TABLE 4.

HCV genotype observed vs expected in the HCV TM-ASR assaya

Sample Genotypeb Expected HCV RNA log IU/mlc TM-ASR HCV RNA log IU/ml Observed/ expected (%)
1 1a 5.78 6.18 107
2 1a 5.55 6.28 113
3 1a 5.75 6.68 116
4 1a 5.68 6.73 119
5 1a 5.43 5.65 104
6 1b 5.45 6.02 110
7 1b 4.97 5.25 106
8 1b 6.83 7.35 108
9 1b 4.59 4.11 89.4
10 1b 6.67 7.05 106
11 2b 5.64 5.73 102
12 2b 5.43 5.39 99.4
13 2b 5.74 6.06 105
14 2b 6.79 6.79 100
15 2b 6.54 6.99 107
16 3a 3.63 3.82 105
17 3a 3.29 3.06 92.9
18 3a 5.45 6.24 114
19 1a 5.57 6.63 119
20 4 5.80 6.92 119
21 4c/d 5.04 5.48 109
22 3a 5.80 6.66 115
23 4h 5.34 5.96 112
24 5a 6.66 6.92 104
25 5a 6.26 6.54 104
a

Genotype inclusively for the lot-specific HCV TM-ASR reagents using the Qiagen BioRobot 9604 was determined using clinical samples from eight different HCV genotypes purchased from Millennium Biotech (Ft. Lauderdale, FL). Genotype-specific samples were extracted using the QIAamp 96 virus/Qiagen BioRobot 9604 and amplified and detected using COBAS TaqMan ASR reagents on the COBAS TaqMan analyzer.

b

HCV genotypes were determined by Millennium Biotech.

c

Expected HCV RNA titers for each sample were obtained from Millennium Biotech.