Table 1.

Host and Viral Proteins along with their Active Sites Used in HerpDock.".

					Positive Control
Protein	Reference for HSV−1	Reference for Docking	PDB ID	Active Site	Sorafenib
STAT3	[32]	[39]	1BG1	Arg609, Arg595, Lys591, Arg609, Ser611, Glu612, Ser613, Gln633, Ile634, Gln635, Ser636, Val637, Gln638, Met586, Gly587, Phe588, Ilu589, and Ser590	Rapamycin
mTOR(rapamycin binding site)	[33]	[40]	4DRI	PHE2108,TYR2105,PHE77,LYS88,TYR113,VAL86,SER118,ASP68,PHE2039,PHE130	OGT 2115
Heperanase	[34]	[34]	5E9C	Thr97, Asn224, His296, Gln383, Arg93 and Lys232	Stevioside
AKT	[35]	[41]	3QKM	HIS134,LYS276,GLU278	Penciclovir
HSV−1 thymidine kinase	[36]	[36]	1KI3	Arg176, Tyr172, Gln125, His58 and Glu83	Acyclovir
HSV−1 DNA polymerase	[37]	[37]	2GV9	ASP717,PHE718,TYR722,PRO723,TYR818,VAL817	Not Available
gD (HVEM binding site)	[38]	[42]	1JMA	Ala7, Ser8, Leu9, Lys10, Met11, Ala12, Asp13, Pro14, Asn15, Val24, Leu25, Asp26, Gln27, Leu28, Thr29, Asp30, Pro31, Pro32	Not Available
Nectin−1 (gD binding site)	[38]	[42]	3U82	Ser59, Lys61, Thr63, Gln64, Thr66, Gln68, Lys75, Gln76, Asn77, Ile80, Tyr81, Asn82, Met85, Gly86, Val87, Ser88, Leu90, Glu125, Ala127, Thr128, Phe129, Pro130, Thr131, Gly132, and Asn133	Not Available
gD (Nectin−1 binding site)	[38]	[42]	3U82	Pro23, Leu25, Gln27, Arg36, Val37, Tyr38, His39, Gln132, Val214, Asp215, Ser216, Ile217, Gly218, Met219, Leu220, Pro221, Arg222, Phe223, Thr230, Val231, Tyr234	Not Available
HVEM (gD binding site)	[38]	[42]	1JMA	Pro17, Lys18, Cys19, Ser20, Pro21, Gly22, Tyr23, Arg24, Val25, Lys26, Gly30, Glu31, Leu32 Thr33, Gly34, Thr35, Val36, Cys37, Glu38, Pro39, Ser74, Arg75, and Thr76	Not Available