Table 3.
Evaluation results of structural alignment for RNA sequences tRNAs (D31785, J04815) and 5 S rRNAs (X54477, X02731)
| tRNAs | 5S rRNAs | |||||
|---|---|---|---|---|---|---|
| SEN | PPV | F-Score | SEN | PPV | F-Score | |
| REDalign | 0.985 | 0.985 | 0.985 | 0.982 | 0.982 | 0.982 |
| PARTS | 0.642 | 0.623 | 0.632 | 0.526 | 0.513 | 0.519 |
| Foldalign | 0.433 | 0.426 | 0.430 | 0.816 | 0.802 | 0.809 |
| Dynalign2 | 0.418 | 0.431 | 0.424 | 0.289 | 0.282 | 0.286 |
| LocaRNA | 0.433 | 0.439 | 0.436 | 0.623 | 0.612 | 0.617 |
| SPARSE | 0.433 | 0.426 | 0.430 | 0.211 | 0.240 | 0.224 |
| RNABERT | 0.567 | 0.551 | 0.559 | 0.789 | 0.783 | 0.786 |
| RNAmountAlign | 0.478 | 0.464 | 0.471 | 0.526 | 0.513 | 0.519 |
| LinearTurboFold | 0.642 | 0.623 | 0.632 | 0.553 | 0.563 | 0.558 |