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. 2024 Sep 25;9(10):e00629-24. doi: 10.1128/msphere.00629-24

Fig 3.

The image depicts the structure of the brain using autofluorescence. The forebrain, midbrain, and hindbrain are highlighted in color in lateral and medial views. The hierarchical relationships between these brain regions are depicted in a schematic map.

Schematics detailing developing mouse brain atlas overlay and regional segmentation of cleared brains. (A and B) The 3D-reconstructed Allen Developing Mouse Brain Reference Atlas (P14) (31–33) was aligned and overlaid with reovirus-infected brain data sets using the brainreg Python package. Allen Developing Mouse Brain Reference Atlas, https://developingmouse.brain-map.org. (A) Representative sagittal optical plane images depicting autofluorescence from brain tissue (left column) alone or overlaid with the fitted model from the 3D-reconstructed Allen Developing Mouse Brain Atlas—P14 (right column) (31–33). Brain subregions are colored according to identity; see key for details. (B) Schematic describing relationships between brain regions and subregions used for imaging studies; see key for details.