TABLE 1.

Virus-specific HCR probes^a

Probe pair name	Complementary to hairpin–spacer–complementary to RNA of interest
T1L-S3-P1a	GAGGAGGGCAGCAAACGG–AA–TGAGTGAGGAAGCCATAGTGACGAC
T1L-S3-P1b	CTCTCTTGATCTTAGAGATCGCAGC–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P2a	GAGGAGGGCAGCAAACGG–AA–TCACGTTTAGCATACTGGAGCGGTC
T1L-S3-P2b	TCCAGATTCCTTTGTCCAAGCAGAC–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P3a	GAGGAGGGCAGCAAACGG–AA–TAGCTGCAGATCAGCTCTCTCATGG
T1L-S3-P3b	AACCCATCAGTGTGGTCGACCTTGA–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P4a	GAGGAGGGCAGCAAACGG–AA–CCATACCCATAGTGAACAATCTGGC
T1L-S3-P4b	AAGGCTCAGTGGTAATGTGTAGTCC–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P5a	GAGGAGGGCAGCAAACGG–AA–AAGCTAACGTCATGCAGTCCAAATC
T1L-S3-P5b	CACCATCAAGTGTAATCATGTAGGG–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P6a	GAGGAGGGCAGCAAACGG–AA–GCTAATCCCTTAAGTCCATCATCC
T1L-S3-P6b	TCACATCCGTATGAGATATCCATGC–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P7a	GAGGAGGGCAGCAAACGG–AA–TTGATGCATCGTGAAGAATCCATGC
T1L-S3-P7b	CTGCCGTTTCCTCGCAATATAACT–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P8a	GAGGAGGGCAGCAAACGG–AA–ATCAATGGTAGCAAATGAAGAAGCC
T1L-S3-P8b	CATCACACAAAACCTGAAACACTGG–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P9a	GAGGAGGGCAGCAAACGG–AA–AGTCCAAAGTCTCATCGTTTCACGC
T1L-S3-P9b	AACCACTGAATCGTCCAACGCCGAT–TA–GAAGAGTCTTCCTTTACG
T1L-S3-P10a	GAGGAGGGCAGCAAACGG–AA–TCGACCTCGATCCAGCGAAATACTC
T1L-S3-P10b	AGCATCAGTAGCATCAGCTGCTACC–TA–GAAGAGTCTTCCTTTACG

^a Sequences for HCR probes specific for the reovirus S3 gene. Bold sequences indicate complementarity to the hairpin; italic sequences indicate complementarity to the RNA of interest.