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. Author manuscript; available in PMC: 2024 Nov 7.
Published in final edited form as: J Chem Theory Comput. 2024 Jun 21;20(13):5583–5597. doi: 10.1021/acs.jctc.4c00308

Table 1:

Optimum number of clusters over for the studied systems, as determined by running three replicas of the Greedy, Vanilla, and CPPTRAJ algorithms. Top: k values determined from the absolute minimum of the DBI index. Bottom: k values determined from the 2nd derivative of the DBI index. In all cases, only k values bigger or equal to 5 were considered.

Algorithm/System β-heptapeptide β-hairpin HP35
Absolute DBI values
NANI 6/6/6 16/16/16 7/7/7
Greedy 15/23/17 20/18/12 7/7/7
Vanilla 5/27/5 18/15/11 7/5/7
CPPTRAJ 5/6/30 15/11/9 5/12/5
2nd Derivative of DBI values
NANI 8/8/8 9/9/9 10/10/10
Greedy 8/15/17 20/12/12 7/17/7
Vanilla 14/8/13 11/11/11 7/18/7
CPPTRAJ 20/6/15 15/8/6 8/19/10