| 4CL1 | lignin-associated 4-coumarate:CoA ligase 1 |
| ABE | Adenine Base Editor |
| AvrLM7 | avirulence gene 7 in Leptosphaeria maculans |
| BBM | BABY BOOM |
| BE | Base Editor |
| BEMGE | Base-Editing Mediated Gene Evolution |
| Cas | CRISPR-associated protein |
| CBE | Cytosine Base Editor |
| CCR2 | cinnamoyl CoA reductase 2 |
| CRISPR | Clustered Regularly Interspaced Short Palindromic Repeats |
| CSE1/2 | caffeoyl shikimate esterase 1 or 2 |
| DD45 | gene 45 expressed in egg cells and early embryos |
| DOF | DNA binding with one finger transcription factor |
| DSB | Double-Strand Break |
| EC | egg cell-secreted protein |
| FT2 | Flowering locus T2 |
| GIF | GRF-interacting factor |
| GRF | growth-regulating factor |
| gRNA | guide RNA |
| HDR | Homology-Directed Repair |
| HEGs | homing endonuclease genes |
| HY5a | Elongated hypocotyl 5 |
| IATs | isothermal amplification technologies |
| InDels | insertions or deletions |
| JA | jasmonic acid |
| LAC14 | laccase gene 14 |
| LAMP | loop-mediated isothermal amplification |
| Lat52 | Pollen-specific gene 52 |
| LEAFY | transcription factor promoting floral cell fate |
| NF-YB21 | NF-Y gene B21 |
| NGS | Next-Generation Sequencing |
| NHEJ | Non-homologous End Joining |
| NPR | Nonexpressor of Pathogenesis-Related gene |
| OSIC1 | Osmotic stress induced C2H2 gene 1 |
| PAM | Protospacer Adjacent Motif |
| PcBRC1/2 | BRANCHED gene 1 or 2 from Populus × canescens |
| PdGNC | GATA, nitrate-inducible, carbon-metabolism involved protein from Populus deltoides |
| PE | Prime Editing |
| pegRNA | Prime Editing guide RNA |
| PHBMT1 | p-hydroxybenzoyl-CoA monolignol transferase 1 |
| PHYB | phytochrome B |
| PIF | phytochrome interacting factor |
| PtoERF15 | Ethylene response factor 15 from Populus tomentosa |
| PtoMYB142 | R2R3 MYB transcription factor 142 from Populus tomentosa |
| QTLs | quantitative trait loci |
| RAA | recombinase-aided amplification |
| RCA | rolling circle amplification |
| REF1 | regeneration factor 1 |
| RNPs | ribonucleoproteins |
| RPA | recombinase polymerase amplification |
| RPA | Replication Protein A |
| SA | salicylic acid |
| sgRNA | single guide RNA |
| STEME | Saturated Targeted Endogenous Mutagenesis Editor |
| TAC1 | Tiller Angle Control 1 |
| WOX5 | WUSCHEL-related HOMEOBOX 5 |
| WRKY77 | transcription factor gene 77 containing WRKY domain |
| WUS | WUSCHEL |
| yao | a conserved WD-repeat containing nucleolar protein found in Arabidopsis yaozhe mutant |