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. 2024 Oct 29;29(21):5112. doi: 10.3390/molecules29215112

Table 5.

Docking results of compounds 3a–g, 3i–k, and 3m with human mast cell tryptase (PDB: 2ZA5) in silico.

Molecules Estimated Total Energy (kcal/mol) a Binding Affinity (kcal/mol) b Residue Chain A c
3a −100.957 −8.7 HIS42, ARG153
3b −100.858 −9.0 ASP147, GLN206
3c −97.333 −8.6 HIS42, ASP147 ARG153, GLN206
3d −100.224 −9.1 HIS42, ASP146, GLN206
3e −87.828 −8.6 TRP145, GLN206
3f −98.296 −8.7 HIS42, TYR81, TRP145, ASP147, GLN206
3g −95.208 −8.7 HIS42, TYR81, TRP145, ASP147, GLN206
3i −100.404 −8.0 HIS42, ASP147
3j −100.032 −8.3 HIS42, ARG153
3k −97.9363 −7.5 TYR39, TYR81, ARG153, LEU154
3m −86.146 −8.6 HIS42, TYR81, TRP145, ASP147

a Estimated total energy values were calculated by iGEMDOCK [59]. b Binding affinity of ligands to the macromolecule was calculated with the use of PyRx [60]. c The residues of monomer A which took part in H bonding are represented.