Table A1.

Comparative Performance of genomic prediction models in terms of Pearson´s correlation (COR) (A), Normalized Root Mean Square Error (NRMSE) (B), Percentage of Matching in top 10% (PM_10) (C), and top 20% (PM_20) (D) for the TPE_1_2021_2022 data set under Incomplete Block Design (IBD Cross-Validation and Random Cross-Validation.

METRIC	CV	MODEL	MIN	MEAN	MEDIAN	MAX	SD	RE (%)
COR	IBD	GBLUP	0.825	0.849	0.845	0.875	0.017	0.323
COR	IBD	GBLUP_CE	0.742	0.825	0.840	0.869	0.044	3.188
COR	IBD	GBLUP_CE_Abs	0.729	0.829	0.830	0.873	0.041	2.759
COR	IBD	GBLUP_CE_mean	0.776	0.833	0.840	0.870	0.029	2.176
COR	IBD	GBLUP_CE_Res	0.812	0.842	0.842	0.879	0.022	1.085
COR	IBD	GBLUP_TRN	0.824	0.852	0.849	0.880	0.019	0.000
COR	Random	GBLUP	0.762	0.799	0.802	0.829	0.019	8.592
COR	Random	GBLUP_CE	0.739	0.789	0.797	0.818	0.025	9.898
COR	Random	GBLUP_CE_Abs	0.725	0.785	0.791	0.833	0.037	10.547
COR	Random	GBLUP_CE_mean	0.766	0.808	0.814	0.829	0.021	7.422
COR	Random	GBLUP_CE_Res	0.764	0.804	0.803	0.837	0.021	7.971
COR	Random	GBLUP_TRN	0.834	0.868	0.864	0.896	0.017	0.000
NRMSE	IBD	GBLUP	0.507	0.612	0.615	0.700	0.062	10.170
NRMSE	IBD	GBLUP_CE	0.546	0.670	0.676	0.741	0.060	20.681
NRMSE	IBD	GBLUP_CE_Abs	0.600	0.686	0.672	0.801	0.057	23.602
NRMSE	IBD	GBLUP_CE_mean	0.587	0.675	0.675	0.771	0.057	21.525
NRMSE	IBD	GBLUP_CE_Res	0.582	0.664	0.671	0.719	0.043	19.667
NRMSE	IBD	GBLUP_TRN	0.476	0.555	0.561	0.618	0.043	0.000
NRMSE	Random	GBLUP	0.564	0.627	0.628	0.679	0.038	23.757
NRMSE	Random	GBLUP_CE	0.649	0.681	0.667	0.738	0.034	34.315
NRMSE	Random	GBLUP_CE_Abs	0.615	0.700	0.702	0.776	0.045	38.149
NRMSE	Random	GBLUP_CE_mean	0.628	0.675	0.666	0.761	0.038	33.242
NRMSE	Random	GBLUP_CE_Res	0.604	0.664	0.659	0.724	0.031	31.017
NRMSE	Random	GBLUP_TRN	0.455	0.507	0.508	0.568	0.033	0.000
PM_10	IBD	GBLUP	48.485	65.758	62.121	84.848	11.521	−0.922
PM_10	IBD	GBLUP_CE	42.424	60.000	63.636	69.697	9.236	8.586
PM_10	IBD	GBLUP_CE_Abs	36.364	60.909	60.606	84.848	13.282	6.965
PM_10	IBD	GBLUP_CE_mean	36.364	60.303	62.121	78.788	11.014	8.040
PM_10	IBD	GBLUP_CE_Res	48.485	63.333	65.152	78.788	8.505	2.871
PM_10	IBD	GBLUP_TRN	42.424	65.152	63.636	84.848	12.392	0.000
PM_10	Random	GBLUP	48.485	63.333	66.667	78.788	9.416	7.177
PM_10	Random	GBLUP_CE	48.485	62.727	63.636	72.727	9.040	8.213
PM_10	Random	GBLUP_CE_Abs	54.545	63.939	63.636	72.727	5.794	6.161
PM_10	Random	GBLUP_CE_mean	54.545	64.545	63.636	75.758	7.831	5.164
PM_10	Random	GBLUP_CE_Res	54.545	63.333	62.121	75.758	6.136	7.177
PM_10	Random	GBLUP_TRN	48.485	67.879	69.697	78.788	8.713	0.000
PM_20	IBD	GBLUP	63.636	70.606	69.697	84.848	6.235	0.429
PM_20	IBD	GBLUP_CE	51.515	65.758	65.152	81.818	8.812	7.834
PM_20	IBD	GBLUP_CE_Abs	48.485	66.667	66.667	78.788	9.367	6.364
PM_20	IBD	GBLUP_CE_mean	57.576	66.970	66.667	78.788	6.136	5.882
PM_20	IBD	GBLUP_CE_Res	57.576	66.970	65.152	81.818	7.619	5.882
PM_20	IBD	GBLUP_TRN	63.636	70.909	69.697	84.848	6.731	0.000
PM_20	Random	GBLUP	59.091	69.697	71.212	77.273	5.249	3.913
PM_20	Random	GBLUP_CE	54.545	65.000	63.636	77.273	7.871	11.422
PM_20	Random	GBLUP_CE_Abs	51.515	61.970	57.576	75.758	9.270	16.870
PM_20	Random	GBLUP_CE_mean	56.061	67.576	67.424	75.758	5.449	7.175
PM_20	Random	GBLUP_CE_Res	59.091	66.818	67.424	74.242	5.553	8.390
PM_20	Random	GBLUP_TRN	60.606	72.424	74.242	78.788	5.430	0.000