Table A4.

Comparative Performance of genomic prediction models in terms of Pearson´s correlation (COR) (A), Normalized Root Mean Square Error (NRMSE) (B), Percentage of Matching in top 10% (PM_10) (C), and top 20% (PM_20) (D) for the Across-data sets under Incomplete Block Design (IBD Cross-Validation and Random Cross-Validation.

METRIC	CV	MODEL	MIN	MEAN	MEDIAN	MAX	SD	RE (%)
COR	IBD	GBLUP	0.553	0.819	0.840	0.885	0.064	3.234
COR	IBD	GBLUP_CE	0.545	0.786	0.798	0.900	0.066	7.625
COR	IBD	GBLUP_CE_Abs	0.563	0.781	0.796	0.881	0.067	8.353
COR	IBD	GBLUP_CE_Res	0.557	0.795	0.809	0.894	0.062	6.341
COR	IBD	GBLUP_CE_mean	0.584	0.791	0.804	0.886	0.062	6.906
COR	IBD	GBLUP_TRN	0.723	0.846	0.849	0.890	0.028	0.000
COR	Random	GBLUP	0.574	0.802	0.812	0.873	0.054	4.538
COR	Random	GBLUP_CE	0.549	0.758	0.770	0.841	0.064	10.548
COR	Random	GBLUP_CE_Abs	0.517	0.757	0.773	0.844	0.072	10.748
COR	Random	GBLUP_CE_Res	0.589	0.777	0.798	0.854	0.058	7.893
COR	Random	GBLUP_CE_mean	0.583	0.773	0.788	0.857	0.061	8.470
COR	Random	GBLUP_TRN	0.594	0.838	0.858	0.904	0.067	0.000
NRMSE	IBD	GBLUP	0.480	0.597	0.567	0.873	0.093	2.138
NRMSE	IBD	GBLUP_CE	0.538	0.685	0.674	0.882	0.072	17.235
NRMSE	IBD	GBLUP_CE_Abs	0.570	0.696	0.687	0.881	0.071	19.113
NRMSE	IBD	GBLUP_CE_Res	0.517	0.674	0.664	0.942	0.079	15.271
NRMSE	IBD	GBLUP_CE_mean	0.541	0.681	0.678	0.824	0.068	16.618
NRMSE	IBD	GBLUP_TRN	0.467	0.584	0.551	1.090	0.113	0.000
NRMSE	Random	GBLUP	0.500	0.616	0.601	0.879	0.080	5.335
NRMSE	Random	GBLUP_CE	0.597	0.711	0.708	0.858	0.056	21.566
NRMSE	Random	GBLUP_CE_Abs	0.601	0.716	0.711	0.882	0.061	22.390
NRMSE	Random	GBLUP_CE_Res	0.572	0.689	0.684	0.909	0.065	17.804
NRMSE	Random	GBLUP_CE_mean	0.589	0.698	0.695	0.830	0.059	19.245
NRMSE	Random	GBLUP_TRN	0.428	0.585	0.530	1.014	0.156	0.000
PM_10	IBD	GBLUP	9.091	55.393	57.576	84.848	12.836	3.462
PM_10	IBD	GBLUP_CE	12.500	48.956	48.732	73.469	12.735	17.067
PM_10	IBD	GBLUP_CE_Abs	9.091	48.453	48.485	84.848	14.124	18.283
PM_10	IBD	GBLUP_CE_Res	18.182	51.463	54.545	78.788	13.780	11.365
PM_10	IBD	GBLUP_CE_mean	16.667	48.828	48.980	78.788	13.503	17.373
PM_10	IBD	GBLUP_TRN	27.273	57.311	57.955	84.848	10.870	0.000
PM_10	Random	GBLUP	27.273	54.581	54.824	78.788	12.279	2.546
PM_10	Random	GBLUP_CE	15.152	48.416	47.159	72.727	14.479	15.603
PM_10	Random	GBLUP_CE_Abs	12.121	48.571	50.000	72.727	14.630	15.234
PM_10	Random	GBLUP_CE_Res	18.182	49.453	50.510	75.758	13.908	13.179
PM_10	Random	GBLUP_CE_mean	18.182	48.628	48.980	79.167	14.235	15.100
PM_10	Random	GBLUP_TRN	9.091	55.970	54.545	87.500	14.294	0.000
PM_20	IBD	GBLUP	22.727	64.066	66.667	84.848	10.220	5.696
PM_20	IBD	GBLUP_CE	22.727	59.846	60.606	81.818	10.276	13.149
PM_20	IBD	GBLUP_CE_Abs	22.727	59.565	60.606	78.788	10.733	13.683
PM_20	IBD	GBLUP_CE_Res	31.818	61.310	63.636	81.818	9.749	10.448
PM_20	IBD	GBLUP_CE_mean	27.273	60.405	60.915	78.788	10.281	12.102
PM_20	IBD	GBLUP_TRN	40.909	67.715	67.929	84.848	8.298	0.000
PM_20	Random	GBLUP	40.909	63.410	64.899	78.571	8.349	3.038
PM_20	Random	GBLUP_CE	36.364	59.309	59.184	77.273	8.738	10.163
PM_20	Random	GBLUP_CE_Abs	37.879	58.871	59.091	75.758	8.495	10.982
PM_20	Random	GBLUP_CE_Res	40.909	60.861	60.606	74.242	7.140	7.353
PM_20	Random	GBLUP_CE_mean	40.909	60.746	60.606	75.758	7.820	7.557
PM_20	Random	GBLUP_TRN	40.909	65.336	67.007	79.592	8.849	0.000