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. Author manuscript; available in PMC: 2024 Nov 9.
Published in final edited form as: Mol Psychiatry. 2020 Jan 27;26(8):4277–4287. doi: 10.1038/s41380-020-0652-5

Fig. 2. ASV and taxa prevalences for DEPR vs. NODEP.

Fig. 2

a ALDEx2 effect sizes for taxons assigned from ASVs. Displayed cut-offs are effect size ≥0.5 (NODEP) or ≤−0.5 (DEPR). b DEPR ASVs and taxons. c NODEP ASVs and taxons. a–c The DADA2/ALDEx2/PIME pipeline output 55% prevalence dataset taxa names were assigned to each 86 unique ASV, regardless of whether multiple sequences could be assigned the same taxonomic name, based on the naive Bayesian classifier method and the SILVA ribosomal RNA gene database [35] version v132. Redundant multiple copies (N > 1) or unique (N = 1) taxonomic names for the ASVs are shown at the levels of Family, Genus, and species. The full set of all ALDEx2 effect sizes ASV sequences are listed in Supplementary Information Table 1-SI and Table-2SI.