Table 1.
Genes and proteins overlapping in multiple experiments. All genes shown that are represented in at least three datasets, plus all genes intersected between F1 transcriptome and at least one other dataset. Saliva and salivary gland data are proteins, head and body data are transcripts. A. Proteins and upregulated genes in virulent aphids (VIR parent, VIR F1 pool); B. Proteins and upregulated genes in avirulent aphids (AVR parent, AVR F1 pool). Y = protein present and/or RNA differentially expressed. Full gene and protein lists are in Supplementary Material 4 and 5
| Gene | Annotation | Saliva | Salivary gland | Parent head | Parent body | F1 body |
|---|---|---|---|---|---|---|
| A) VIR parent & VIR F1 | ||||||
| ACPISUM_000319 | ACYPI007553 | Y | Y | Y | ||
| ACPISUM_006458 | aldo–keto reductase family 1 member B10-like | Y | Y | Y | ||
| ACPISUM_025240 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_005699 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_025168 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_009258 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_024778 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_026844 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_025015 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_023906 | Apoptosis inducing protein | Y | Y | Y | ||
| ACPISUM_020864 | F-actin-capping protein subunit alpha | Y | Y | Y | ||
| ACPISUM_023535 | glutamate-gated chloride channel-like | Y | Y | |||
| ACPISUM_019971 | glutathione hydrolase 1 proenzyme-like | Y | Y | Y | ||
| ACPISUM_010531 | hypothetical protein X975_16721 | Y | Y | |||
| ACPISUM_013751 | LYR motif-containing protein 4 | Y | Y | Y | ||
| ACPISUM_013796 | myrosinase 1-like | Y | Y | |||
| ACPISUM_006164 | –-NA–- | Y | Y | Y | ||
| ACPISUM_023321 | papain inhibitor-like | Y | Y | Y | ||
| ACPISUM_009624 | proline-rich extensin-like protein EPR1 | Y | Y | Y | ||
| ACPISUM_028519 | single-stranded DNA-binding replication protein A | Y | Y | Y | ||
| ACPISUM_025560 | ubiquinone biosynthesis monooxygenase COQ6, mitochondrial | Y | Y | Y | ||
| ACPISUM_008675 | uncharacterized protein LOC100162547 | Y | Y | Y | ||
| ACPISUM_007320 | uncharacterized protein LOC100167449 | Y | Y | Y | Y | |
| ACPISUM_001031 | uncharacterized protein LOC100571631 | Y | Y | Y | ||
| ACPISUM_016519 | uncharacterized protein LOC100573156 | Y | Y | Y | ||
| ACPISUM_010687 | uncharacterized protein LOC103309122 | Y | Y | Y | ||
| ACPISUM_017388 | uncharacterized protein LOC103309964 | Y | Y | Y | Y | |
| ACPISUM_009099 | uncharacterized protein LOC112598674 | Y | Y | Y | ||
| ACPISUM_027918 | vacuolar protein sorting-associated protein 29 | Y | Y | Y | ||
| B) AVR parent & AVR F1 | ||||||
| ACPISUM_000957 | AGAP002382-PA-like protein | Y | Y | Y | ||
| ACPISUM_015173 | AGAP011571-PA-like protein | Y | Y | |||
| ACPISUM_002223 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_003737 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_023448 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_028967 | aminopeptidase N | Y | Y | Y | Y | |
| ACPISUM_021545 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_009259 | aminopeptidase N | Y | Y | Y | ||
| ACPISUM_009580 | anoctamin-1-like | Y | Y | Y | ||
| ACPISUM_012705 | CD63 antigen | Y | Y | Y | ||
| ACPISUM_006933 | cuticular protein | Y | Y | Y | ||
| ACPISUM_019160 | glutathione S-transferase 1–1-like | Y | Y | Y | Y | |
| ACPISUM_019168 | glutathione S-transferase 1–1-like | Y | Y | Y | Y | |
| ACPISUM_001883 | glutathione S-transferase D7-like | Y | Y | Y | ||
| ACPISUM_016389 | histone acetyltransferase KAT6B isoform X1 | Y | Y | |||
| ACPISUM_009097 | multidrug resistance-associated protein 1 | Y | Y | Y | ||
| ACPISUM_011553 | –-NA–- | Y | Y | Y | ||
| ACPISUM_011754 | –-NA–- | Y | Y | Y | Y | |
| ACPISUM_004702 | –-NA–- | Y | Y | |||
| ACPISUM_021569 | –-NA–- | Y | Y | |||
| ACPISUM_025236 | –-NA–- | Y | Y | |||
| ACPISUM_014327 | –-NA–- | Y | Y | Y | ||
| ACPISUM_016390 | –-NA–- | Y | Y | Y | ||
| ACPISUM_017200 | –-NA–- | Y | Y | Y | ||
| ACPISUM_027631 | –-NA–- | Y | Y | Y | ||
| ACPISUM_028853 | –-NA–- | Y | Y | Y | ||
| ACPISUM_019381 | neural cell adhesion molecule L1 isoform X1 | Y | Y | Y | ||
| ACPISUM_020816 | peroxidase-like | Y | Y | Y | Y | |
| ACPISUM_019857 | peroxidase-like | Y | Y | Y | ||
| ACPISUM_019870 | peroxidasin homolog | Y | Y | Y | ||
| ACPISUM_000958 | phospholipase DDHD2-like | Y | Y | |||
| ACPISUM_006758 | piggyBac transposable element-derived protein 4-like | Y | Y | Y | ||
| ACPISUM_022113 | piwi-like protein Siwi | Y | Y | |||
| ACPISUM_010778 | predicted protein | Y | Y | Y | ||
| ACPISUM_019013 | protein ABHD18 | Y | Y | Y | ||
| ACPISUM_021997 | regucalcin-like | Y | Y | Y | Y | |
| ACPISUM_021999 | regucalcin-like | Y | Y | Y | ||
| ACPISUM_001383 | replication protein A 70 kDa DNA-binding subunit-like | Y | Y | Y | ||
| ACPISUM_015166 | TBC1 domain family member 19 | Y | Y | Y | ||
| ACPISUM_014232 | tubulin glycylase 3A-like | Y | Y | |||
| ACPISUM_008377 | uncharacterized family 31 glucosidase KIAA1161-like | Y | Y | Y | ||
| ACPISUM_008379 | uncharacterized family 31 glucosidase KIAA1161-like | Y | Y | Y | ||
| ACPISUM_008380 | uncharacterized family 31 glucosidase KIAA1161-like | Y | Y | Y | ||
| ACPISUM_012348 | uncharacterized protein LOC100158692 | Y | Y | Y | ||
| ACPISUM_018433 | uncharacterized protein LOC100158721 | Y | Y | |||
| ACPISUM_007487 | uncharacterized protein LOC100160601 | Y | Y | Y | ||
| ACPISUM_016065 | uncharacterized protein LOC100161530 | Y | Y | Y | ||
| ACPISUM_007076 | uncharacterized protein LOC100163035 | Y | Y | Y | ||
| ACPISUM_016064 | uncharacterized protein LOC100570074 | Y | Y | Y | ||
| ACPISUM_029311 | uncharacterized protein LOC100570454 | Y | Y | Y | Y | |
| ACPISUM_008664 | uncharacterized protein LOC100570454 | Y | Y | Y | ||
| ACPISUM_007394 | uncharacterized protein LOC100572241 | Y | Y | Y | Y | |
| ACPISUM_021703 | uncharacterized protein LOC100575642 | Y | Y | Y | ||
| ACPISUM_029930 | uncharacterized protein LOC100575698 | Y | Y | Y | Y | Y |
| ACPISUM_006906 | uncharacterized protein LOC100575848 | Y | Y | Y | ||
| ACPISUM_003989 | uncharacterized protein LOC103307823 | Y | Y | Y | ||
| ACPISUM_024374 | uncharacterized protein LOC107882950 | Y | Y | |||
| ACPISUM_015285 | uncharacterized protein LOC107883982 | Y | Y | Y | ||
| ACPISUM_000491 | uncharacterized protein LOC111028731 | Y | Y | Y | ||
| ACPISUM_027814 | uncharacterized SDCCAG3 family protein-like | Y | Y | Y | ||