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. 2024 Nov 11;11:1212. doi: 10.1038/s41597-024-03761-8

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Fig. 3 — Visualization of BIL data. The bil-data-viewer plugin for napari (left) displays a 3D view of a fMOST dataset with overlaid neuron morphologies rendered from the SWC files which are shown along with the plugin interface. Neuroglancer visualizations (right) are available for many BIL datasests. A link to the neuroglancer example shown here is available at the following search url and is generated from the dataset located at 10.35077/ace-bag-kit. The neuron morphology dataset shown in this example is available at 10.35077/web, and the fMOST images are available at 10.35077/ace-ban-ear. These images were generated to illustrate the capabilities of the napari-bil-data-viewer and BIL neuroglancer viewer. The image on the left can be reproduced by installing napari-bil-data-viewer (v0.5.1 and napari v0.4.18). Image acquisition tools and parameters can be found in corresponding metadata at BIL. The lookup tables were adjusted minimally, for the entire image.