Table 1.
Application | Gene | Specificity | Name | Sequence | Thybr | Size (pb) | References |
---|---|---|---|---|---|---|---|
DNA barcoding | COI | – | C1-J-1718F | GGAGGATTTGGAAATTGATTAGTTCC | 47 °C | 463–472 | Simon et al.28 |
– | C1-N-2191 | CCCGGTAAAATTAAAATATAAACTTC | Simon et al.28 | ||||
18S | – | 18S-441 F | AAATTACCCACTCCCGGCA | 50 °C | 774–828 | Heraty et al.29 | |
– | 18S-1299 R | TGGTGAGGTTTCCCGTGT T | Heraty et al.29 | ||||
28S | – | 28S-F | AGAGAGAGTTCAAGAGTACGTG | 55 °C | 367–489 | Dowton and Austin30 | |
– | 28S-R | TTGGTCCGTGTTTCAAGACGGG | Dowton and Austin30 | ||||
Taqman detection of parasitism | 18S | Parasitoid-group | Taqman probe/ParTaq536 | FAM- CTTGGATCGTCGCAAG-MGB | 60 °C | 145 | This study |
Parasitoid-group | Par500F | CCGAG(G/A)TAATGATTAATAGGGACAGA | |||||
- | Par643R | CGAACCTCTAACTTTCGTTCTTGA | |||||
Group specific detection | 18S | Parasitoid-group | Par164F | AAGCTCGTAGTTGAATCTGTG | 60 °C | 302–358 | This study |
Parasitoid-group | Par473R | CCCCCATCTGTCCCTATTA | |||||
Midge-group | Cec164F | ACGTTCGTAGTTGAACTTGTG | 60 °C | 326 | This study | ||
Midge-group | Cec473R | CCCCCAATTGCCTCCATTA | |||||
Species specific detection | 18S | Parasitoid-group | Par164F | AAGCTCGTAGTTGAATCTGTG | This study | ||
M. penetrans | macro382R | CAGTATTCAGGCGAACATAG | 60 °C | 214 | |||
E. error | euxe382R | GATTTTTCAGGCTTTTGTTAGG | 60 °C | 246 | |||
P. tuberosula | tuber295R | TAAAGCTCCCAACGAGACGA | 60 °C | 123 | |||
P. equestris | Equation 382R | GAATTTTCAGGCTTTTCAATTG | 55 °C | 239 | |||
P. gracilipes | graci382R | GAATTTTCAGGCGTATATTTTG | 55 °C | 233 | |||
S. myles | sinop382R | GATAATTCAGGCTTGTTGTAGG | 55 °C | 270 |
Thybr: optimal hybridisation temperature.