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. 2024 Nov 13;14:27770. doi: 10.1038/s41598-024-79398-9

Table 1.

Information about the primers and probe used in this study for DNA barcoding and to specifically detect parasitoids in wheat midges.

Application Gene Specificity Name Sequence Thybr Size (pb) References
DNA barcoding COI C1-J-1718F GGAGGATTTGGAAATTGATTAGTTCC 47 °C 463–472 Simon et al.28
C1-N-2191 CCCGGTAAAATTAAAATATAAACTTC Simon et al.28
18S 18S-441 F AAATTACCCACTCCCGGCA 50 °C 774–828 Heraty et al.29
18S-1299 R TGGTGAGGTTTCCCGTGT T Heraty et al.29
28S 28S-F AGAGAGAGTTCAAGAGTACGTG 55 °C 367–489 Dowton and Austin30
28S-R TTGGTCCGTGTTTCAAGACGGG Dowton and Austin30
Taqman detection of parasitism 18S Parasitoid-group Taqman probe/ParTaq536 FAM- CTTGGATCGTCGCAAG-MGB 60 °C 145 This study
Parasitoid-group Par500F CCGAG(G/A)TAATGATTAATAGGGACAGA
- Par643R CGAACCTCTAACTTTCGTTCTTGA
Group specific detection 18S Parasitoid-group Par164F AAGCTCGTAGTTGAATCTGTG 60 °C 302–358 This study
Parasitoid-group Par473R CCCCCATCTGTCCCTATTA
Midge-group Cec164F ACGTTCGTAGTTGAACTTGTG 60 °C 326 This study
Midge-group Cec473R CCCCCAATTGCCTCCATTA
Species specific detection 18S Parasitoid-group Par164F AAGCTCGTAGTTGAATCTGTG This study
M. penetrans macro382R CAGTATTCAGGCGAACATAG 60 °C 214
E. error euxe382R GATTTTTCAGGCTTTTGTTAGG 60 °C 246
P. tuberosula tuber295R TAAAGCTCCCAACGAGACGA 60 °C 123
P. equestris Equation 382R GAATTTTCAGGCTTTTCAATTG 55 °C 239
P. gracilipes graci382R GAATTTTCAGGCGTATATTTTG 55 °C 233
S. myles sinop382R GATAATTCAGGCTTGTTGTAGG 55 °C 270

Thybr: optimal hybridisation temperature.