Table 2. Genome assembly data for Labrus mixtus, fLabMix1.1.
| Genome assembly | ||
|---|---|---|
| Assembly name | fLabMix1.1 | |
| Assembly accession | GCA_963584025.1 | |
| Accession of alternate haplotype | GCA_963583885.1 | |
| Span (Mb) | 740.60 | |
| Number of contigs | 895 | |
| Contig N50 length (Mb) | 2.7 | |
| Number of scaffolds | 324 | |
| Scaffold N50 length (Mb) | 30.4 | |
| Longest scaffold (Mb) | 36.96 | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 59.5 | ≥ 50 |
| k-mer completeness | 100.0% | ≥ 95% |
| BUSCO ** | C:98.5%[S:97.6%,D:0.9%],
F:0.4%,M:1.1%,n:3,640 |
C ≥ 95% |
| Percentage of assembly
mapped to chromosomes |
94.23% | ≥ 95% |
| Sex chromosomes | Not identified | localised homologous pairs |
| Organelles | Mitochondrial genome: 16.49 kb | complete single alleles |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from Rhie et al. (2021).
** BUSCO scores based on the actinopterygii_odb10 BUSCO set using version 5.4.3. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Labrus_mixtus/dataset/GCA_963584025.1/busco.