Table 3:

Count of homozygous and heterzygous genotype calls made by PanGenie. In our benchmark, we excluded the heterozygous calls because the sequencing datasets were derived from homozygous cell lines.

Coverage	APD		DBB		MANN		QBL		SSTO
	Hom	Het	Hom	Het	Hom	Het	Hom	Het	Hom	Het
0.1×	52,816	6,245	51,435	7,626	52,452	6,609	53,707	5,354	53,893	5,168
0.5×	56,249	2,812	55,845	3,216	56,258	2,803	56,447	2,614	56,064	2,997
1×	57,448	1,613	57,010	2,051	57,064	1,997	57,224	1,837	57,099	1,962
2×	58,201	860	57,948	1,113	58,334	727	58,101	960	58,397	664
5×	58,552	509	58,382	679	58,601	460	58,340	721	58,228	833
10×	58,533	528	58,478	583	58,188	873	58,343	718	58,337	724
Complete data	58,647	414	58,457	604	58,592	469	58,457	604	58,521	540