Skip to main content
. 2024 Oct 16;15:1473145. doi: 10.3389/fimmu.2024.1473145

Table 3.

Results of whole exon sequencing of tumor specimens.

Patient ID Gene Name Mutation MT Epitope Seq Peptide Length HLA Allele N W C
1 ASUN H/Y HYKDAHVDF 9 HLA-A*24:02 184.036 3380.08 18.366
1 PFKFB3 E/K SVTPLASPK 9 HLA-A*03:01 344.702 5681.68 16.483
1 SMC6 E/K VLYNRSLNK 9 HLA-A*03:01 131.594 2169.05 16.483
1 PPP1R8 E/K STRAYTLRK 9 HLA-A*03:01 141.948 2339.71 16.483
1 AADAC G/R KTIQNLVVR 9 HLA-A*03:01 396.762 4018.93 10.129
1 CDH16 P/L VSIPELSPL 9 HLA-C*03:04 423.374 3236.91 7.646
1 KANSL1 NI/I GESSFDINI 9 HLA-B*40:01 200.676 819.146 4.082
1 PTPRF R/W QEWIIMYEL 9 HLA-B*40:01 154.782 554.879 3.585
1 ZNF253 T/A KAFTWPSIL 9 HLA-C*03:04 414.311 932.715 2.251
1 DNAH17 T/M MMLPTFIAK 9 HLA-A*03:01 123.322 216.465 1.755
1 RNF4 V/M METAGDEIV 9 HLA-B*40:01 182.056 312.718 1.718
1 ARHGAP15 D/V KNAIVRLPK 9 HLA-A*03:01 379.957 645.631 1.699
1 SHKBP1 D/N NLLVSELYR 9 HLA-A*03:01 446.909 711.664 1.592
1 PRICKLE4 D/N RLETIRNPK 9 HLA-A*03:01 471.752 704.005 1.492
1 BRI3BP A/V VYWFLSLTL 9 HLA-A*24:02 265.87 363.864 1.369
1 ARHGAP15 D/Y LQSYIDFII 9 HLA-B*40:01 271.686 352.242 1.297
1 DLGAP1 R/W RMWSGSYIK 9 HLA-A*03:01 200.676 254.608 1.269
1 DIEXF S/F LIAFPLGLR 9 HLA-A*03:01 427.98 487.316 1.139
1 USP31 G/R KRFRLPFVL 9 HLA-B*27:05 79.9987 87.2318 1.09
1 TP53 G/S SSCMSGMNR 9 HLA-A*03:01 437.342 471.752 1.079
1 ZNF493 T/A EECGKAFSV 9 HLA-B*40:01 367.822 379.957 1.033
1 CYP2A13 A/V LFKGYGVVF 9 HLA-A*24:02 289.908 299.473 1.033
1 PC S/T YFIEVNTRL 9 HLA-A*24:02 487.316 487.316 1
1 ASUN R/W HYCTGAYWI 9 HLA-A*24:02 198.516 196.38 0.989
1 RTN4RL2 A/T RRLLQAPTS 9 HLA-B*27:05 223.607 214.136 0.958
1 KIF13A V/I RLRQAITVK 9 HLA-A*03:01 405.442 388.269 0.958
1 SIL1 E/K VEAIKGGAL 9 HLA-B*40:01 121.995 115.571 0.947
1 ZNF493 E/G HRIIHTGEK 9 HLA-B*27:05 392.493 337.323 0.859
1 GHRL M/I LAIAGSSFL 9 HLA-C*02:02 442.1 359.948 0.814
1 02-Mar A/T LRGTQDHLR 9 HLA-B*27:05 476.884 384.09 0.805
1 RCSD1 P/S ALLPGASSK 9 HLA-A*03:01 482.072 344.702 0.715
1 SLC34A3 R/H HRVAGSVLK 9 HLA-B*27:05 134.472 95.1188 0.707
1 ZNF362 S/L RAYLDSASL 9 HLA-C*03:04 306.024 170.612 0.558
1 ATP13A1 R/Q QEGARVLAL 9 HLA-B*40:01 119.384 44.1204 0.37
2 ZMYM1 NT/X VIASHSSKF 9 HLA-B*15:01 456.685 10757.6 23.556
2 ARL14EPL C/F QQIERQLKF 9 HLA-B*15:01 379.957 5044.15 13.276
2 TARDBP S/L SQQNQSGPL 9 HLA-B*15:01 432.636 4106.84 9.493
2 HERC3 YD/Y EYTFYIPEI 9 HLA-A*24:02 437.342 4151.52 9.493
2 PER2 S/L CSASGSAAL 9 HLA-B*15:01 432.636 4106.84 9.493
2 CD3G AV/AF IVSIFVLAF 9 HLA-B*15:01 442.1 4062.65 9.189
2 OR5H6 G/X MYLFLEFSL 9 HLA-A*24:02 74.9703 631.809 8.427
2 GLT6D1 P/L RFAEEYLRL 9 HLA-A*24:02 312.718 2054.82 6.571
2 OR4K5 D/Y FVYICQASF 9 HLA-B*15:01 271.686 1501.43 5.526
2 SIGLEC8 V/M MISWIGASM 9 HLA-B*15:01 471.752 2390.89 5.068
2 DOCK4 T/M CSMSETSGF 9 HLA-B*15:01 302.73 953.119 3.148
2 SNX18 P/A LQASPQQLY 9 HLA-B*15:01 375.868 1133.26 3.015
2 LMO7 T/M YMMDDAWKY 9 HLA-B*15:01 432.636 1235.73 2.856
2 SLC25A47 V/L FYRGLSLPL 9 HLA-A*24:02 437.342 1006.1 2.3
2 MYO9B V/M MAAASPSAM 9 HLA-B*15:01 330.102 696.429 2.11
2 CPN2 Q/W WQGSLGLQY 9 HLA-B*15:01 319.559 585.724 1.833
2 ANKRD12 N/H HVSNIHSSF 9 HLA-B*15:01 482.072 864.682 1.794
2 TIRAP R/Q AYPPELQFM 9 HLA-A*24:02 289.908 461.653 1.592
2 LAMA1 V/L LEIQANLLF 9 HLA-B*15:01 340.993 482.072 1.414
2 IL10RB A/V VFAKGNLTF 9 HLA-A*24:02 271.686 371.823 1.369
2 TNS1 D/N SYSSPNYSL 9 HLA-A*24:02 271.686 356.074 1.311
2 GLRA3 T/S YSIRLSLTL 9 HLA-B*15:01 409.852 503.394 1.228
2 CCDC38 D/G FGSEGSLEF 9 HLA-B*15:01 451.771 548.908 1.215
2 MDH1B A/V VYRYESVIW 9 HLA-A*24:02 414.311 497.976 1.202
2 KRT19 A/V RFGAQLVHI 9 HLA-A*24:02 401.079 482.072 1.202
2 ADH6 C/R ISRGFSTGF 9 HLA-B*15:01 456.685 537.157 1.176
2 BHLHE22 Q/P AYLNQGPAI 9 HLA-A*24:02 161.628 188.062 1.164
2 CACHD1 A/V GYLVVHPTL 9 HLA-A*24:02 277.629 319.559 1.151
2 ULK1 I/V MYMAPEVVM 9 HLA-A*24:02 192.176 205.066 1.067
2 PLEKHM3 L/S SYDNTQLQL 9 HLA-C*04:01 492.617 520.002 1.056
2 ITPKA R/C ALCGCVPAF 9 HLA-B*15:01 461.653 392.493 0.85
2 TTN E/K YQIKSSIDF 9 HLA-B*15:01 115.571 98.257 0.85
2 GLB1L2 A/V TMVGPALQF 9 HLA-B*15:01 471.752 396.762 0.841
2 ALPK1 T/M AFSAYMPLF 9 HLA-A*24:02 226.039 182.056 0.805
2 CYP2E1 N/D PWLQLYDNF 9 HLA-A*24:02 274.641 214.136 0.78
3 MEX3C AAAAA/A REAAAAGVL 9 HLA-B*40:06 134.472 5932.98 44.12
3 CLEC4D R/W RWLSYFLGL 9 HLA-A*24:02 151.468 2145.7 14.166
3 SLC45A3 ALGPTEPAEGLSA/A VAEEAAPSL 9 HLA-C*08:01 309.353 2635.42 8.519
3 MYO16 K/M YEREKAFQM 9 HLA-B*40:06 312.718 1422.36 4.548
3 TKTL2 W/L GESSEGSVL 9 HLA-B*40:06 456.685 1904.94 4.171
3 METTL21C L/FX RFSTDYEFF 9 HLA-A*24:02 216.465 727.232 3.36
3 FLT4 R/L RFLESTEVI 9 HLA-A*24:02 168.776 514.406 3.048
3 C10orf120 D/Y QEYLSSASP 9 HLA-B*40:06 482.072 1304.42 2.706
3 CHRDL1 C/Y RVRCPNVHY 9 HLA-A*30:01 316.12 743.14 2.351
3 OR10K1 N/Y RYMAICYPL 9 HLA-A*24:02 46.0718 93.0826 2.02
3 CFH C/F YQFQNLYQL 9 HLA-B*13:02 352.242 688.934 1.956
3 ALG1L2 L/M CMPACAVNF 9 HLA-A*24:02 409.852 792.984 1.935
3 CACNA1S N/D WFTDFILLF 9 HLA-A*24:02 200.676 263.008 1.311
3 CYP26B1 R/H KEVMHLFTP 9 HLA-B*40:06 326.549 401.079 1.228
3 APOB T/N FERNRQNII 9 HLA-B*13:02 414.311 451.771 1.09
3 COMMD10 A/T MAVPTALIL 9 HLA-C*08:01 471.752 492.617 1.044
3 PTPRO E/K NYFFKFEEF 9 HLA-A*24:02 165.163 168.776 1.022
3 ZNF597 Q/E SELISHENI 9 HLA-B*13:02 359.948 356.074 0.989
3 PYDC1 A/T YEDYTAELV 9 HLA-B*40:06 316.12 306.024 0.968
3 CEP97 S/T NEITFLASL 9 HLA-B*40:06 316.12 306.024 0.968
3 ZBTB39 F/V IEQTVMYII 9 HLA-B*13:02 323.035 302.73 0.937
3 FMN1 A/T TSIPPPPPL 9 HLA-C*08:01 388.269 344.702 0.888
3 GATA6 A/V REPGGYAAV 9 HLA-B*40:06 209.552 184.036 0.878
3 ANKRD26 S/C AELECGSIA 9 HLA-B*40:06 344.702 296.25 0.859
3 ZNF518B L/F KTKQVHFSR 9 HLA-A*30:01 456.685 388.269 0.85
3 MCAM R/C CRCSGKQEM 9 HLA-C*06:02 476.884 363.864 0.763
3 RWDD3 IV/MM KYVKMMEKW 9 HLA-A*24:02 401.079 299.473 0.747
4 PIK3R1 Q/X YLMWLTQKV 9 HLA-A*02:01 6.71458 216.465 32.238
4 CXCR4 F/L NLLCKAVHV 9 HLA-A*02:01 15.6149 286.788 18.366
4 MALT1 R/Q CQATGHPFV 9 HLA-A*02:01 124.664 2032.71 16.306
4 FLT4 T/M SMLHDAHGN 9 HLA-A*02:01 356.074 5500.22 15.447
4 FAT1 P/L FPAADELPL 9 HLA-B*15:11 196.38 2936.57 14.953
4 AR R/W RLWKCYEAG 9 HLA-A*02:01 451.771 6610.93 14.633
4 RECQL4 R/W GVWRGTGVL 9 HLA-A*02:01 432.636 6330.92 14.633
4 ATM Q/X KMMEVQKSL 9 HLA-A*02:01 53.03 759.397 14.32
4 TBX3 P/L PLPGLGFAL 9 HLA-A*02:01 178.159 1437.83 8.071
4 BLM S/I SIIIGSSSA 9 HLA-A*02:01 446.909 3272.12 7.322
4 PTPRS A/V FIHEALLEV 9 HLA-A*02:01 24.0712 105.988 4.403
4 HGF Q/H EHHKMRMVL 9 HLA-B*38:01 442.1 1691.19 3.825
4 PTPRT P/X QVKFLNPRK 9 HLA-A*30:01 461.653 1709.59 3.703
4 IRS1 R/H HHCTPGTGL 9 HLA-B*38:01 363.864 1235.73 3.396
4 PTEN R/C TIPSQRCYV 9 HLA-A*02:01 312.718 893.209 2.856
4 ACVR1B R/H HVHTCIPKV 9 HLA-A*02:01 178.159 497.976 2.795
4 PTPRD T/M LLLTFFLRM 9 HLA-A*02:01 66.558 104.847 1.575
4 TSC1 R/H ALFHHLYGM 9 HLA-A*02:01 17.0267 23.3024 1.369
4 CTNNA1 V/A PLLALIEAA 9 HLA-A*02:01 148.226 200.676 1.354
4 NKX2-1 A/T APAPGTASL 9 HLA-B*15:11 492.617 625.01 1.269
4 RB1 I/L KLERTCELL 9 HLA-A*02:01 221.2 251.868 1.139
4 NF1 R/Q FMAIQNPLE 9 HLA-A*02:01 344.702 371.823 1.079
4 SDHA Y/C SISAQCPVV 9 HLA-A*02:01 130.178 133.025 1.022
4 SOX2 A/P MHRYDVSPL 9 HLA-B*38:01 446.909 446.909 1
4 TET2 G/V VTRFHFQQR 9 HLA-A*30:01 437.342 432.636 0.989
4 ANKRD11 A/V VLASSLIGG 9 HLA-A*02:01 277.629 260.178 0.937
4 SPRED1 H/R MLYRCMSDS 9 HLA-A*02:01 306.024 268.762 0.878
4 POLD1 D/G FMVGTDIVG 9 HLA-A*02:01 286.788 230.984 0.805
4 RUNX1 R/H HILPPCTNA 9 HLA-A*02:01 296.25 226.039 0.763
4 FOXL2 P/S FLNNSWSLP 9 HLA-A*02:01 192.176 102.603 0.534
5 SLC6A3 G/R FRPPHYRAY 9 HLA-C*07:02 401.079 1967.79 4.906
5 EVPL R/I LLQQLEFAI 9 HLA-A*02:07 48.6329 2664.09 54.78
5 HCN1 P/R RVDYIFLIV 9 HLA-A*02:07 126.02 560.916 4.451
5 DAPK1 R/H MVYGGVHIV 9 HLA-A*02:07 23.5559 84.4457 3.585
5 NOC3L E/A KLARELREA 9 HLA-A*02:07 151.468 466.676 3.081
5 THAP8 R/H SCFQWHWGV 9 HLA-A*02:07 196.38 476.884 2.428
5 LOXL4 R/Q ALGPQGQRL 9 HLA-A*02:07 223.607 379.957 1.699
5 TTN R/H KMKPHPIAI 9 HLA-A*02:07 274.641 375.868 1.369
5 FERMT2 K/N NMKYVKVNV 9 HLA-A*02:07 375.868 487.316 1.297
5 SASH1 S/I ITLSQVPSL 9 HLA-A*02:07 172.469 218.82 1.269
5 SGMS1 R/Q AQLQRIMKL 9 HLA-A*02:07 151.468 188.062 1.242
5 ZNF556 R/H FSCPKSFHA 9 HLA-A*02:07 392.493 471.752 1.202
5 CCDC168 Q/P HLKPKPKYV 9 HLA-A*02:07 492.618 585.724 1.189
5 TGM3 T/M KLKPNMPFA 9 HLA-A*02:07 138.909 161.628 1.164
5 POGK D/N SMNTNMVII 9 HLA-A*02:07 80.869 94.0952 1.164
5 BPIFB4 D/N LIDVNTEFL 9 HLA-A*02:07 216.465 251.868 1.164
5 MOS E/D RSFWADLNV 9 HLA-A*02:07 414.311 466.676 1.126
5 SETD1A P/S DLQDSRCHV 9 HLA-A*02:07 312.718 348.452 1.114
5 BTNL3 S/F GMIIVFFKF 9 HLA-A*02:07 211.831 223.607 1.056
5 OR2A25 V/A MLANLLHPA 9 HLA-A*02:07 14.6334 14.9535 1.022
5 OR5B2 M/T LVFTSSFNI 9 HLA-A*02:07 82.638 81.7487 0.989
5 LAMA5 V/I LLLIGLALL 9 HLA-A*02:07 18.1687 17.5884 0.968
5 LRRC18 I/M KVARNCMKI 9 HLA-A*02:07 482.072 451.771 0.937
5 TMEM151A A/V VLIRRLQQA 9 HLA-A*02:07 92.0809 86.293 0.937
5 NDUFS7 R/S SGCDRIVPV 9 HLA-A*02:07 333.693 306.024 0.917
5 DNAH3 A/E DLAEEMPAL 9 HLA-A*02:07 119.384 103.719 0.869
5 SLC10A4 N/S TLAPSASSL 9 HLA-A*02:07 119.384 101.499 0.85
5 VSIG10L M/I IRSEGDQLL 9 HLA-C*07:02 363.864 296.25 0.814
5 NEUROD1 R/G GLAKNYIWA 9 HLA-A*02:07 128.777 104.847 0.814
5 TP53 L/R GLAPPQHRI 9 HLA-A*02:07 100.406 79.1378 0.788
5 CILP2 D/N YQGNFTIEV 9 HLA-A*02:07 68.7539 52.4594 0.763
6 MMP17 P/PL PLLPLLLLL 9 HLA-A*02:01 55.9779 1672.99 29.887
6 NEB S/L SLVLYKEDV 9 HLA-A*02:01 101.499 2842.78 28.008
6 CACNA1F R/Q NQNNNFQTF 9 HLA-B*15:01 188.062 1602.13 8.519
6 ASXL1 QK/Q KQKKKERTW 9 HLA-B*15:01 5210.57 42971.9 8.247
6 ATP7B I/F RINLVLALF 9 HLA-B*15:01 645.631 3307.72 5.123
6 ADAMTS1 V/M LLAAALLAM 9 HLA-B*15:01 384.09 1946.61 5.068
6 PITPNM2 V/M KVRAGAVDM 9 HLA-B*15:01 2145.7 10874.7 5.068
6 PIK3CA H/R ARHGGWTTK 9 HLA-C*07:02 2390.89 9447.76 3.952
6 TREX2 V/M AMVRTLQAF 9 HLA-B*15:01 249.158 727.232 2.919
6 IL7R T/I LLIISILSF 9 HLA-B*15:01 198.516 573.186 2.887
6 OR1I1 I/F IFTDSHLHT 9 HLA-C*07:02 7131.08 16405 2.3
6 MMP17 P/PL LSRLPLLPL 9 HLA-B*15:01 1318.61 2968.51 2.251
6 AMER1 R/H KGFFSSIRH 9 HLA-B*15:01 9550.53 20813.9 2.179
6 PLEKHA4 P/S SSSRNTTPY 9 HLA-B*15:01 645.631 1376.93 2.133
6 DLGAP4 R/C WSTTLLSPC 9 HLA-B*15:01 5681.68 10414 1.833
6 OR51M1 F/L IHRAIIKLL 9 HLA-C*07:02 2390.89 4242.33 1.774
6 LRRC16B R/H RGPSFHRKM 9 HLA-A*02:01 32085.8 50000 1.558
6 LRRC16B R/H RGPSFHRKM 9 HLA-B*15:01 5932.98 8478.89 1.429
6 SEMA5A R/H CSHDCSRGI 9 HLA-C*07:02 2240.61 3202.08 1.429
6 POM121L12 G/S SLSPWSLSF 9 HLA-B*15:01 299.473 409.852 1.369
6 RELN G/S SSQPVTWAI 9 HLA-B*15:01 3454.02 4526.88 1.311
6 TEX13B D/E GLATAGGEW 9 HLA-B*15:01 3848.7 4989.87 1.297
6 RCVRN A/T FQSIYTKFF 9 HLA-B*15:01 293.062 371.823 1.269
6 ZNF395 E/V FLLDVPAPR 9 HLA-B*15:01 6469.41 8119.76 1.255
6 NTRK3 K/T YRTFTTESD 9 HLA-C*07:02 1485.27 1824.25 1.228
6 ALDH3B2 R/H TVANHVAWF 9 HLA-B*15:01 819.146 1006.1 1.228
6 LRMP G/S MSFLTSQLF 9 HLA-B*15:01 205.066 251.868 1.228
6 POM121L12 G/S LKPSLSPWS 9 HLA-C*07:02 3529.58 4196.68 1.189
6 RCVRN A/T IYTKFFPDT 9 HLA-C*07:02 2579.01 3066.45 1.189
6 MMP21 A/V ALAEVVRRF 9 HLA-A*02:01 598.537 688.934 1.151
6 LAMA1 Q/H VGFSCHDCA 9 HLA-A*02:01 3066.45 3454.02 1.126
6 GM2A S/T GCIKIAATL 9 HLA-B*40:01 631.81 688.934 1.09
6 IQUB D/N CNNLSDLVM 9 HLA-B*15:01 1904.94 2010.83 1.056
6 PITPNM2 V/M VRAGAVDMV 9 HLA-C*07:02 1584.89 1672.99 1.056
6 SLC26A9 A/T HTNITSLIF 9 HLA-C*07:02 18279.6 19088.1 1.044
6 RELN G/S WYQGFYPAS 9 HLA-C*07:02 2664.09 2722.37 1.022
6 PIK3CA H/R RHGGWTTKM 9 HLA-B*15:01 3932.89 3890.57 0.989
6 SLC26A9 A/T HTNITSLIF 9 HLA-B*15:01 461.653 446.909 0.968
6 GPR83 A/T DEQSTEAAL 9 HLA-B*40:01 196.38 190.108 0.968
6 GGN A/V APAPVAAPI 9 HLA-B*40:01 4018.93 3807.28 0.947
6 MMP21 A/V ALAEVVRRF 9 HLA-B*15:01 864.682 819.146 0.947
6 SDCCAG3 S/L LVVQQKRAV 9 HLA-C*07:02 6262.79 5932.98 0.947
6 HNRNPA1 G/E FGNDGGYEG 9 HLA-A*02:01 5932.98 5560.06 0.937
6 PKHD1L1 N/S SRSIKIVGE 9 HLA-C*07:02 3848.7 3606.79 0.937
6 NCKAP5 S/C TLEREVPCS 9 HLA-A*02:01 1946.61 1824.25 0.937
6 GM2A S/T GCIKIAATL 9 HLA-B*15:01 2240.61 2099.77 0.937
6 PCDH20 I/V VISLGSVTL 9 HLA-C*07:02 10302 9447.76 0.917
6 PER3 A/T TLSTGSPPM 9 HLA-C*07:02 6062.77 5382.48 0.888
6 SPHK2 A/T HLGTDLVAA 9 HLA-B*15:01 7208.66 6330.92 0.878
6 PER3 A/T TLSTGSPPM 9 HLA-B*15:01 743.14 652.654 0.878
6 GABRR1 A/T LQTYFPTTL 9 HLA-B*15:01 1085.26 932.715 0.859
6 NCKAP5 S/C REVPCSTDG 9 HLA-B*15:01 7446.48 6399.79 0.859
6 GRM4 T/M KLYIQMTTL 9 HLA-B*40:01 1249.17 1017.05 0.814
6 NEB S/L NQKNFSLVL 9 HLA-B*15:01 548.908 442.1 0.805
6 VASH1 V/I DLRDGGIPF 9 HLA-B*15:01 819.146 631.81 0.771
6 GRM4 T/M KLYIQMTTL 9 HLA-B*15:01 1209.27 932.715 0.771
6 AIFM3 A/T RPKEFFRTY 9 HLA-B*15:01 1904.94 1453.47 0.763
6 TTN A/V YSLLIAEVY 9 HLA-B*15:01 864.682 652.654 0.755
6 FAT4 V/I DLNDNAPIF 9 HLA-B*15:01 1517.76 1133.26 0.747
6 TNIP1 M/L LAMEHPPPL 9 HLA-B*15:01 837.065 560.916 0.67
6 PCDH20 I/V GSVTLVTGM 9 HLA-B*15:01 1362.11 846.171 0.621
6 OR51M1 F/L RAIIKLLGL 9 HLA-B*15:01 1884.44 1121.07 0.595
6 PSG1 L/W LPMTHSWKL 9 HLA-B*15:01 4830.5 2842.78 0.589
6 SETD7 Y/C ECDTDGRLI 9 HLA-C*07:02 7609.38 1517.76 0.199