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. Author manuscript; available in PMC: 2024 Nov 18.
Published in final edited form as: Nat Protoc. 2019 Oct 4;14(11):3059–3081. doi: 10.1038/s41596-019-0212-0

Table 1 |.

Troubleshooting table

Step Problem Possible reason Solution

5 Delayed or improper dissection of cortices Usage of inappropriate tools can cause difficulties Use curved-end forceps
11 The pellet does not seem red or is covered with a white layer The pellet was not properly resuspended Mix the pellet from Step 9 completely with 15% (wt/vol) dextran–DPBS by pipetting
The pellet does not appear at the bottom of tube The concentration of dextran solution was incorrect Confirm that the dextran completely dissolves. Do not exceed the correct final volume
12 Debris is too close to the pellet. It is difficult to get a clean pellet Dextran was not mixed thoroughly with brain lysate or a small volume of dextran solution was used Increase the volume of dextran and mix the pellet thoroughly by pipetting. If necessary, wipe out debris from the walls of the tube with a Kimwipe
14 The pellet becomes trapped inside the pipette tip The microvessels can easily adhere to the surface of plastic Pre-wet the pipette tip by pipetting 1× DPBS in and out repeatedly
17 The pellet is very small or invisible The microvessels remain in the cell strainer or BSA was not added to the medium Use enough volume to retrieve the microvessels from the strainer. Add BSA (0.5% (wt/vol)) to pellet the microvessels