TABLE 1.
List of QTLs related to panicle number detected by GWAS analysis.
| QTLs | Chr | QTL region (bp) | Lead SNP | P-value | Reported gene/QTL | Reported gene/QTL region (bp) |
|---|---|---|---|---|---|---|
| 2021 | ||||||
| qPN1.1 | 1 | 3481185_4243959 | 1_3985818 | 5.67746E-06 | ||
| qPN1.2 | 1 | 30126040_30526212 | 1_30326040 | 8.49689E-06 | ||
| qPN8 | 8 | 21797950_23198042 | 8_21997950 | 6.99537E-05 | OsCKX11 | 22616784_22619732 |
| qPN11 | 11 | 20706068_21208693 | 11_20915884 | 7.05536E-05 | ||
| qPN12 | 12 | 13476849_14793388 | 12_14593388 | 5.71066E-05 | qPN-12 | 8826555_14450887 |
| 2022 | ||||||
| qPN1.1 | 1 | 3481185_4222632 | 1_3905918 | 1.29812E-05 | ||
| qPN4 | 4 | 7334105_9761390 | 4_7538796 | 3.14277E-05 | qpn4.9 | 6574396_13635012 |
| qPN6 | 6 | 10189872_10590245 | 6_10389872 | 1.69048E-05 | ||
| qPN8 | 8 | 21797950_23817234 | 8_23617237 | 3.51111E-05 | OsCKX11 | 22616784_22619732 |
| 2021/2022 | ||||||
| qPN1.1 | 1 | 3476704_4243959 | 1_3681185 | 7.71111E-06 | ||
| qPN4 | 4 | 7033052_9761390 | 4_7538796 | 1.85711E-05 | qpn4.9 | 6574396_13635012 |
| qPN6 | 6 | 10189872_10590245 | 6_10389872 | 6.41375E-05 | ||
| qPN8 | 8 | 21797950_23198042 | 8_23617237 | 3.74857E-05 | OsCKX11 | 22616784_22619732 |
| qPN12 | 12 | 14236827_14793388 | 12_14593388 | 5.85377E-05 | qPN-12 | 8826555_14450887 |