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. 2024 Nov 18;24:383. doi: 10.1186/s12935-024-03552-6

Table 4.

Positive predictive values of CagA and NFATc1 for HPE responsiveness in stage IE/IIE1 gastric MALT lymphoma

Expression of CagA and NFATc1 molecules
in tumor tissue
Number of patients with gastric MALT lymphoma who received first-line HPE
HPE-responsive
(n = 59)
HPE-irresponsive
(n = 32)
CagA positive 47 7
CagA negative 12 25
PPVa for CagA expression = 47 of 54 (87.0%)
Specificityb for CagA expression = 25 of 32 (78.1%)
NFATc1 positive 43 8
NFATc1 negative 16 24
PPVa for NFATc1 expression = 43 of 51 (84.3%)
Specificityb for NFATc1 expression = 24 of 32 (75.0%)
CagA and NFATc1 are all positive
Yes 38 4
No 21 28
PPV¶ for combined CagA and NFATc1 = 38 of 42 (90.5%)
Specificityc for combined CagA and NFATc1 = 28 of 32 (87.5%)

aPositive predictive value (PPV) = Number of HPE-responsive cases who had CagA expression or nuclear NFATc1 localization/Total positive cases for respective CagA expression or nuclear NFATc1 localization

bSpecificity = Number of HPE-irresponsive cases who had no CagA expression or nuclear NFATc1 localization/Total HPE-irresponsive cases

 PPV = Number of HPE-responsive cases who had all CagA and nuclear NFATc1 localization/Total cases expressing all CagA and nuclear NFATc1 localization

cSpecificity = Number of HPE-irresponsive cases who did not simultaneously express CagA and nuclear NFATc1 localization in tumors/Total HPE-irresponsive cases

MALT Mucosa-associated lymphoid tissue, HPE Helicobacter pylori eradication