Table 1.

Comparison of utilities offered by MOI with other existing pipelines.

	MOI	nf-core/rnaseq	nf-core/rnasplice	nf-core/quantms	nf-core/metaboigniter	Galaxy-P
Preprocessing steps	*	*	*	*	*	*
Functional annotation of RNA	*					Partially
Differential isoform usage	*		*
Differential feature expression	*	*	*			*
Differential lipidomic expression	*
Integration of multiple omics (data-driven)	*
Integration of multiple omics (biology-driven)	*
Pathway Enrichment Analysis	*					Partially
Semantic correlation analysis	*