REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
Analyzed data | This paper | GEO: GSE124272 GEO: GSE150408 GEO: GSE172049 GEO: GSE47603 GEO: GSE67311 |
Oligonucleotides | ||
Primer: NADK2 forward, GCTCTACAGTCCGGAAGAACC; NADK2 reverse, GCATCCCAACAACGAGAACG, |
This paper | N/A |
Primer: β-ACTIN forward, GATCATTGCTCCTCCTGAGC; β-ACTIN reverse, ACTCCTGCTTGCTGATCCAC. |
This paper | N/A |
Software and algorithms | ||
Limma package (version 3.54.2) | N/A | |
ggplot2 package (version 3.4.4) | N/A | |
ComplexHeatmap package (version 2.15.4) | N/A | |
VennDiagram package (version 1.7.3) | N/A | |
R software (version 4.2.2) | https://cloud.r-project.org/ | |
SVA package (version 3.46.0) | N/A | |
pROC package (version 1.18.0) | N/A | |
rmda package (version 1.6) | N/A | |
rms package (version 6.4.0) | N/A | |
ResourceSelection packages (version 0.3–5) | N/A | |
Cibersort/GSVA packages (version 1.44.5) | https://cibersortx.stanford.edu/ | |
ClusterProfiler package (version 4.6.2) | N/A |