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. 2024 Nov 20;25:1119. doi: 10.1186/s12864-024-11025-3

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — Comparison of repetitive DNA among acroporid taxa. (A) Percentage of the genome attributed to the main transposable element classes [DNA transposons, long interspersed nuclear element (LINE), short interspersed nuclear element (SINE), long terminal repeat (LTR), rolling circle (RC) and other (satellites, simple repeats, and unclassified)] for each acroporid taxon. (B-F) Repeat landscapes of all transposable element classes except “other” for A. palmata (B), A. cervicornis (C), A. tenuis (D), A. digitifera (E) and A. millepora (F). The percentage of genome coverage (y-axis) of each repeat is shown relative to the Jukes-Cantor genetic distance observed between a given repetitive element and its respective consensus sequence. Individual repetitive elements were then summarized by their repeat class. The more recent repetitive element copies have lower Jukes-Cantor distance on the left side of the x-axis. The inset plot in each panel focuses on recent repeat insertions at a Jukes-Cantor distance below 0.05 (gray shaded region in full plot)