Table 1.
Overview of the fold change of the top 25 substrate sequences during the three incubation rounds of the Enrich2 CLiPS Library with PANC-1 lysates.
Start | PDAC-1 | PDAC-2 | PDAC-3 | ||||
---|---|---|---|---|---|---|---|
Sequence | Ratio | Ratio | Fold change | Ratio | Fold change | Ratio | Fold change |
CLIQFF | 2.22E−08 | 4.12E−06 | 185.83 | 1.05E−05 | 472.44 | 8.96E−05 | 4038.53 |
NQCYVS | 2.22E−08 | 2.42E−06 | 108.84 | 6.76E−06 | 304.61 | 5.79E−05 | 2608.85 |
FLIFLI | 6.66E−08 | 1.07E−05 | 160.61 | 3.81E−05 | 572.57 | 1.69E−04 | 2544.51 |
FWGLVW | 2.22E−08 | 1.12E−06 | 50.44 | 2.80E−06 | 126.26 | 4.65E−05 | 2096.53 |
FLFNAC | 1.55E−07 | 8.63E−06 | 55.56 | 2.83E−05 | 182.11 | 3.01E−04 | 1935.79 |
VQLMVI | 6.66E−08 | 3.24E−06 | 48.67 | 9.76E−06 | 146.61 | 1.18E−04 | 1769.46 |
QDDEFL | 1.55E−07 | 5.19E−06 | 33.37 | 2.53E−05 | 162.57 | 2.64E−04 | 1696.07 |
FHLDLN | 2.22E−08 | 9.43E−07 | 42.48 | 2.93E−06 | 132.05 | 3.61E−05 | 1626.91 |
PVLLVG | 2.44E−07 | 1.01E−05 | 41.51 | 2.19E−05 | 89.72 | 3.66E−04 | 1499.44 |
SGHHHS | 4.44E−08 | 5.92E−06 | 133.40 | 2.39E−05 | 538.47 | 6.31E−05 | 1421.21 |
CSFAVS | 1.09E−06 | 7.93E−06 | 7.29 | 7.27E−05 | 66.80 | 1.28E−03 | 1180.51 |
IYACSS | 2.00E−07 | 5.54E−06 | 27.73 | 1.38E−05 | 69.27 | 2.17E−04 | 1084.92 |
QCCLYL | 8.66E−07 | 1.16E−05 | 13.41 | 5.11E−05 | 58.98 | 9.26E−04 | 1069.43 |
FFLFSS | 2.22E−08 | 6.84E−06 | 307.95 | 1.24E−05 | 558.72 | 2.35E−05 | 1058.15 |
LIFLRN | 1.33E−07 | 3.15E−06 | 23.67 | 8.56E−06 | 64.27 | 1.26E−04 | 944.42 |
FLIVHS | 2.66E−07 | 9.43E−06 | 35.40 | 3.78E−05 | 142.09 | 2.22E−04 | 832.63 |
CTVLHD | 1.78E−07 | 3.39E−06 | 19.08 | 1.03E−05 | 58.20 | 1.44E−04 | 813.46 |
LCMLCY | 1.78E−07 | 4.63E−06 | 26.05 | 1.19E−05 | 67.01 | 1.40E−04 | 789.42 |
PPRPMF | 8.88E−08 | 3.95E−06 | 44.47 | 1.22E−05 | 137.58 | 6.98E−05 | 786.46 |
PPELLI | 2.22E−08 | 5.01E−07 | 22.57 | 1.51E−06 | 67.87 | 1.73E−05 | 777.29 |
IFWRMR | 4.44E−07 | 7.98E−06 | 17.99 | 2.28E−05 | 51.45 | 3.09E−04 | 696.25 |
FLFLFL | 2.22E−08 | 5.13E−06 | 230.96 | 8.57E−06 | 386.16 | 1.52E−05 | 686.97 |
CALFSI | 2.22E−08 | 1.30E−06 | 58.40 | 3.56E−06 | 160.46 | 1.52E−05 | 686.26 |
CTVLND | 1.78E−07 | 1.41E−06 | 7.96 | 6.75E−06 | 38.01 | 1.19E−04 | 670.16 |
SCRWSE | 1.55E−07 | 6.54E−06 | 42.10 | 1.79E−05 | 115.37 | 1.04E−04 | 668.67 |
The start ratio is determined by normalizing the reads per substrate to the total amount of reads in a given sample.