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. 2024 Nov 20;13(1):40. doi: 10.1038/s41389-024-00542-1

Table 1.

Overview of the fold change of the top 25 substrate sequences during the three incubation rounds of the Enrich2 CLiPS Library with PANC-1 lysates.

Start PDAC-1 PDAC-2 PDAC-3
Sequence Ratio Ratio Fold change Ratio Fold change Ratio Fold change
CLIQFF 2.22E−08 4.12E−06 185.83 1.05E−05 472.44 8.96E−05 4038.53
NQCYVS 2.22E−08 2.42E−06 108.84 6.76E−06 304.61 5.79E−05 2608.85
FLIFLI 6.66E−08 1.07E−05 160.61 3.81E−05 572.57 1.69E−04 2544.51
FWGLVW 2.22E−08 1.12E−06 50.44 2.80E−06 126.26 4.65E−05 2096.53
FLFNAC 1.55E−07 8.63E−06 55.56 2.83E−05 182.11 3.01E−04 1935.79
VQLMVI 6.66E−08 3.24E−06 48.67 9.76E−06 146.61 1.18E−04 1769.46
QDDEFL 1.55E−07 5.19E−06 33.37 2.53E−05 162.57 2.64E−04 1696.07
FHLDLN 2.22E−08 9.43E−07 42.48 2.93E−06 132.05 3.61E−05 1626.91
PVLLVG 2.44E−07 1.01E−05 41.51 2.19E−05 89.72 3.66E−04 1499.44
SGHHHS 4.44E−08 5.92E−06 133.40 2.39E−05 538.47 6.31E−05 1421.21
CSFAVS 1.09E−06 7.93E−06 7.29 7.27E−05 66.80 1.28E−03 1180.51
IYACSS 2.00E−07 5.54E−06 27.73 1.38E−05 69.27 2.17E−04 1084.92
QCCLYL 8.66E−07 1.16E−05 13.41 5.11E−05 58.98 9.26E−04 1069.43
FFLFSS 2.22E−08 6.84E−06 307.95 1.24E−05 558.72 2.35E−05 1058.15
LIFLRN 1.33E−07 3.15E−06 23.67 8.56E−06 64.27 1.26E−04 944.42
FLIVHS 2.66E−07 9.43E−06 35.40 3.78E−05 142.09 2.22E−04 832.63
CTVLHD 1.78E−07 3.39E−06 19.08 1.03E−05 58.20 1.44E−04 813.46
LCMLCY 1.78E−07 4.63E−06 26.05 1.19E−05 67.01 1.40E−04 789.42
PPRPMF 8.88E−08 3.95E−06 44.47 1.22E−05 137.58 6.98E−05 786.46
PPELLI 2.22E−08 5.01E−07 22.57 1.51E−06 67.87 1.73E−05 777.29
IFWRMR 4.44E−07 7.98E−06 17.99 2.28E−05 51.45 3.09E−04 696.25
FLFLFL 2.22E−08 5.13E−06 230.96 8.57E−06 386.16 1.52E−05 686.97
CALFSI 2.22E−08 1.30E−06 58.40 3.56E−06 160.46 1.52E−05 686.26
CTVLND 1.78E−07 1.41E−06 7.96 6.75E−06 38.01 1.19E−04 670.16
SCRWSE 1.55E−07 6.54E−06 42.10 1.79E−05 115.37 1.04E−04 668.67

The start ratio is determined by normalizing the reads per substrate to the total amount of reads in a given sample.