Table 2. Genome assembly data for Galeruca laticollis, icGalLati1.1.
| Genome assembly | ||
|---|---|---|
| Assembly name | icGalLati1.1 | |
| Assembly accession | GCA_963921935.1 | |
| Accession of alternate haplotype | GCA_963921905.1 | |
| Span (Mb) | 2,154.60 | |
| Number of contigs | 643 | |
| Contig N50 length (Mb) | 6.4 | |
| Number of scaffolds | 45 | |
| Scaffold N50 length (Mb) | 231.3 | |
| Longest scaffold (Mb) | 320.04 | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 58.3 | ≥ 50 |
| k-mer completeness | 99.99% | ≥ 95% |
| BUSCO ** | C:98.7%[S:97.9%,D:0.8%], F:0.3%,M:1.0%,n:2,124 | C ≥ 95% |
| Percentage of assembly mapped to chromosomes | 99.92% | ≥ 95% |
| Sex chromosomes | XY | localised homologous pairs |
| Organelles | Mitochondrial genome: 19.98 kb | complete single alleles |
| Genome annotation of assembly GCA_963921935.1 at Ensembl | ||
| Number of protein-coding genes | 32,229 | |
| Number of non-coding genes | 830 | |
| Number of gene transcripts | 47,793 | |
*
Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from Rhie et al. (2021).
**
BUSCO scores based on the endopterygota_odb10 BUSCO set using version 5.4.3. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Galeruca_laticollis/dataset/GCA_963921935.1/busco.