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. 2024 Nov 4;9(46):46362–46372. doi: 10.1021/acsomega.4c07398

Figure 2.

Figure 2

Comparison of external and internal false discovery rates (FDR) across tools and data sets. External false discovery rates (FDR) corresponding to an internal FDR of 0.01 for different data sets (MCB, ccRCC, and Prostate) using various tools (HFDiscrim, HFDiscrim-SC, TRIC, PyProphet, and DIAlignR). The dashed line indicates an external FDR threshold of 0.01.