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Identification performance on all 10 samples of the MCB data set (DDA-based spectral library). (A) The number of mouse precursors identified across all 10 samples of the MCB data set at different external FDRs was plotted. (B) Same as in (A) but reports the number of mouse peptides. (C) Same as in (A) but reports the number of mouse proteins. (D) False-discovery rate validation: Internal FDR values were plotted against external FDR values.
