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. Author manuscript; available in PMC: 2024 Nov 27.
Published in final edited form as: Curr Biol. 2024 Oct 16;34(22):5349–5358.e6. doi: 10.1016/j.cub.2024.09.045
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains
AAV2/5-EF1a-DIO-ChRmine-
mScarlet-WPRE-hGHpA
Princeton Neuroscience
Institute Viral Core
N/A
Deposited data
Photometry and behavioral data Generated by this study https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/alex_figure_1_4_supp_1/download_data.py. (This script downloads all raw and processed data from International Brain Lab servers) Documentation for loading the dataset: https://int-brain-lab.github.io/iblenv/notebooks_external/loading_photometry_data.html
Experimental models: Organisms/strains
B6.SJL-S/c6a3tm1.1(cre)Bkmn/J (DAT∷IRES-Cre) The Jackson Laboratory Stock # 006660; RRID: IMSR_JAX:006660
B6.Cg-lgs7tm148.1(tetO-GCaMPSf,CAG-tTA2)Hze/J (Ai148) The Jackson Laboratory Stock # 030328; RRID: IMSR_JAX:030328
Software and algorithms
Neural Encoding model Generated by this study https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline
Behavioral model Generated by this study https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline
Figure visualization Generated by this study https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/tree/main/pipeline/figures
Statistical analyses Generated by this study https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline
Other
Fibers for optogenetics Thor Labs BFL37-300
Ferrules for optogenetics Precision Fiber Products MM-FER-2006SS-330
Fibers for fiber photometry Neurophotometrics FOC_BF_200um/1.25mm
IBL Behavior Rig International Brain Laboratory https://figshare.com/articles/preprint/A_standardized_and_reproducible_method_to_measure_decision-making_in_mice_Appendix_3_IBL_protocol_for_setting_up_the_behavioral_training_rig/11634732
Multi-fiber photometry rig Neurophotometrics FP3002
Branching Bundle Patchcord - Low Autofluorescence Doric Lenses Inc. BBP(3)_200/220/900-0.37_2m_SMA-3xMF1.25_LAF