REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
AAV2/5-EF1a-DIO-ChRmine- mScarlet-WPRE-hGHpA |
Princeton Neuroscience Institute Viral Core |
N/A |
Deposited data | ||
Photometry and behavioral data | Generated by this study | https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/alex_figure_1_4_supp_1/download_data.py. (This script downloads all raw and processed data from International Brain Lab servers) Documentation for loading the dataset: https://int-brain-lab.github.io/iblenv/notebooks_external/loading_photometry_data.html |
Experimental models: Organisms/strains | ||
B6.SJL-S/c6a3tm1.1(cre)Bkmn/J (DAT∷IRES-Cre) | The Jackson Laboratory | Stock # 006660; RRID: IMSR_JAX:006660 |
B6.Cg-lgs7tm148.1(tetO-GCaMPSf,CAG-tTA2)Hze/J (Ai148) | The Jackson Laboratory | Stock # 030328; RRID: IMSR_JAX:030328 |
Software and algorithms | ||
Neural Encoding model | Generated by this study | https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline |
Behavioral model | Generated by this study | https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline |
Figure visualization | Generated by this study | https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/tree/main/pipeline/figures |
Statistical analyses | Generated by this study | https://github.com/YSanchezAraujo/PRE_VIS_DA_CURR_BIO/blob/main/pipeline |
Other | ||
Fibers for optogenetics | Thor Labs | BFL37-300 |
Ferrules for optogenetics | Precision Fiber Products | MM-FER-2006SS-330 |
Fibers for fiber photometry | Neurophotometrics | FOC_BF_200um/1.25mm |
IBL Behavior Rig | International Brain Laboratory | https://figshare.com/articles/preprint/A_standardized_and_reproducible_method_to_measure_decision-making_in_mice_Appendix_3_IBL_protocol_for_setting_up_the_behavioral_training_rig/11634732 |
Multi-fiber photometry rig | Neurophotometrics | FP3002 |
Branching Bundle Patchcord - Low Autofluorescence | Doric Lenses Inc. | BBP(3)_200/220/900-0.37_2m_SMA-3xMF1.25_LAF |