Table 2.

Results of the association analysis between GRAMD1B polymorphism rs109709275 and 36 traits in BSW cattle. *% of phenotypic variability explained with SNP rs109709275 and other SNPs (rank-1) with higher SNP effect for a specific trait.

	Trait	Trait class	SNP effect	Rank	Percent rank	Phenotypic variability*
1	Milk fat yield	milk	0.003694209	2617	6.04081	20.21531
2	Calving interval	reproduction	0.003240869	3430	7.91746	25.12208
3	Rump height	production	0.003402021	3515	8.11366	25.86083
4	Rump angle	exterior	0.003581134	4028	9.29782	27.62449
5	Milk yield	milk	0.003273226	4104	9.47325	28.24709
6	Overall udder score	exterior	0.002904529	5036	11.62458	32.79526
7	Front teat length	exterior	0.003356773	5047	11.64997	33.40014
8	Fore udder attachment	exterior	0.002325045	6808	15.71488	40.98461
9	Fore udder length	exterior	0.002676451	6938	16.01496	41.25329
10	Top line	exterior	0.002233132	8403	19.39661	46.64559
11	Overall rump	production	0.001993696	9703	22.3974	51.74095
12	Rear udder width	exterior	0.00218361	10,419	24.05014	53.97597
13	Milk protein yield	milk	0.002081498	10,780	24.88343	55.28863
14	Milking speed	milk	0.002126747	10,854	25.05424	55.80904
15	Hock quality	exterior	0.001782385	11,983	27.66031	58.88893
16	Longevity	production	0.001764321	12,529	28.92064	60.73292
17	Rump width	production	0.001706142	12,806	29.56004	61.65832
18	Thurl placement	production	0.001561074	13,824	31.90988	64.43125
19	Scs (log2n); somatic cell score	health	0.001708772	15,949	36.81501	69.75879
20	Rump length	production	0.001325549	18,264	42.15872	75.23024
21	Teat thickness	exterior	0.00123856	18,554	42.82812	76.23165
22	Heel height	exterior	0.001377944	19,671	45.40649	78.19852
23	Front teat placement	exterior	0.001108429	21,816	50.35779	82.25086
24	Rear teat direction	exterior	0.001030407	23,646	54.58197	85.22757
25	Overall feet/legs score	exterior	0.000872135	25,604	59.10161	88.05863
26	Rear teat placement	exterior	0.000798565	25,931	59.85642	88.69103
27	Rear udder height	exterior	0.000675109	28,601	66.01957	91.87504
28	Udder balance	exterior	0.000509724	30,888	71.29865	94.40238
29	Foot angle	exterior	0.000604226	31,409	72.50127	94.83624
30	Udder depth	exterior	0.000597598	32,094	74.08245	95.3957
31	Overall frame	production	0.000478474	32,354	74.68261	95.68689
32	Rear-leg set	exterior	0.000507667	32,936	76.02604	96.02775
33	Udder cleft depth	exterior	0.000310256	36,766	84.86681	98.45448
34	Sum (points); overall conformation score	exterior	0.000090297	41,071	94.80403	99.81904
35	Body depth	production	0.000060817	42,046	97.05461	99.94091
36	Chest width	production	0.000051688	42,173	97.34777	99.95302