Table 3.

Transcripts differentially expressed between IAI and iPTB DB specimens by RNA-Seq.

Long RNA Transcripts
Gene Symbol	Linear Fold Change	Description	Raw p value†	FDR†
TM4SF5	2.71	transmembrane 4 L six family member 5	<0.001	0.036
CRABP1	2.43	cellular retinoic acid binding protein 1	<0.001	0.061
SCUBE2	2.29	signal peptide, CUB domain, EGF-like 2	<0.001	0.013
RAB6B	−1.96	RAB6A, member RAS oncogene family	<0.001	0.088
LOC100996634	−1.96	transmembrane protein FLJ37396	<0.001	0.067
OPRK1	−2.06	opioid receptor, kappa 1	<0.001	0.097
CCDC162P	−2.15	coiled-coil domain containing 162, pseudogene	<0.001	0.061
CD300LG	−2.19	CD300 molecule-like family member g	<0.001	0.043
CSMD1	−2.24	CUB and Sushi multiple domains 1	<0.001	0.092
ALPPL2	−2.50	alkaline phosphatase, placental-like 2	<0.001	0.001
TPPP3	−2.56	tubulin polymerization-promoting protein family member 3	<0.001	0.001

^†Only the raw p values and FDRs from the ‘edgeR’ analysis are shown; all transcripts were additionally found to be statistically significant based on ‘DESeq2’ analysis. FDR=false discovery rate.