Table 10.

Variant calling statistics for the mother (SRR29122519) and father (SRR29055922) of KSA001, using Illumina reads aligned to KSA001, CHM13, and GRCh38.

Sample	Reference	Variants	SNPs	Indels	Homozygous	Heterozygous
Mother	KSA001	3,844,863	3,137,864	706,999	575,836	2,718,732
	CHM13	4,609,105	3,776,510	832,595	1,204,406	2,751,851
	GRCh38	4,979,364	4,089,298	890,066	1,474,714	2,757,196
Father	KSA001	4,446,695	3,615,255	831,440	816,030	2,733,448
	CHM13	4,647,609	3,762,777	884,832	1,281,940	2,693,290
	GRCh38	5,012,366	4,075,934	936,432	1,525,662	2,726,041