Table 3.

Expression quantitative trait loci for the GmLHCA4a, GmPRR1a, and GmMDE04 genes.

Region	Method	Gene Name	Linkage group	Marker		LOD	PVE (%)	Additive effect	Dominance effect
				Left marker	Right marker
F2_GM15:49,442,075-49,442,2371	ICIM	GmPRR1a	15	49,442,075	49,442,237	4.3	10.7	2.1	-57.0
	IM	GmPRR1a	15	49,442,075	49,442,237	4.3	10.7	2.1	-57.0
	GCIM	GmMDE04	15	49,442,075	49,442,237	17.1	15.0	0	101.2
	ICIM	GmMDE04	15	49,442,075	49,442,237	4.2	8.7	1.1	96.6
F2_GM18:1,911,667-1,935,3862	GCIM	GmLHCA4a	18	1,911,667	1,911,667	9.8	5.3	0	6,454.1
	ICIM	GmLHCA4a	18	1,911,667	1,935,386	4.5	8.0	1,204.7	8,147.8
RIL_GM04:17,227,512-20,251,6623	ICIM	GmMDE04	4	17,227,512	17,230,775	6.6	14.7	-97.6	N/A
	IM	GmMDE04	4	17,227,512	17,230,775	5.3	0.8	-89.9	N/A
	GCIM	GmPRR1a	4	17,534,130	17,914,073	9.7	19.1	-42.6	N/A
	IM	GmPRR1a	4	18,383,138	20,251,662	6.3	1.4	38.8	N/A
RIL_GM04:31,408,946-31,525,671	ICIM	GmPRR1a	4	31,408,946	31,525,671	10.1	19.9	42.6	N/A
	IM	GmPRR1a	4	31,408,946	31,525,671	6.6	1.5	39.4	N/A
RIL_GM13:37,289,785-38,620,6904	GCIM	GmPRR1a	13b	37,289,785	37,516,022	6.3	13.6	36.0	N/A
	ICIM	GmPRR1a	13b	37,790,482	37,795,923	5.2	9.5	-31.0	N/A
	IM	GmPRR1a	13b	38,027,686	38,620,690	5.8	1.4	-40.0	N/A

¹ The region identified here is F2_GM15:49,442,075-49,442,237 but has been merged to the F2_GM15:49,385,092-49,442,075 region to generate the F2_GM15:49,385,092-49,442,237 hotspot.

² The region identified here is the F2_GM18:1,911,667-1,935,386 but has been merged to the F2_GM18:1,434,182-1,911,667 region to generate the F2_GM18:1,434,182-1,935,386 hotspot.

³ The RIL_GM04:17,227,512-20,251,662 region was obtained by merging the farthest left (GM04: 17,227,512) and right (GM04:20,251,662) markers.

⁴ The RIL_GM13:37,289,785-38,620,690 region was obtained by merging the farthest left (GM04: 37,289,785) and right (GM04:38,620,690) markers.

N/A, not available.