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. 2024 Nov 22;4(1):vbae169. doi: 10.1093/bioadv/vbae169

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© The Author(s) 2024. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — DeepSSETracer 1.1 integrated into ChimeraX. The rectangular subregion (white box) of the cryo-EM density map EMD-33942 was cropped using the crop function (green arrow) of ChimeraX. The helix (transparent yellow) and the β-sheet (transparent cyan) regions that were detected using DeepSSETracer 1.1 are superimposed on the atomic structure of the entire PDB entry (ribbon). The atomic structure is shaded blue (helix), magenta (β-sheet), and gray (remaining molecular segments). The DeepSSETracer 1.1 panel (red arrow) and the installation command (yellow arrow) are indicated.